PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G235500.1 | ||||||||
Common Name | POPTR_0001s24220g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27250.6 Da PI: 7.8724 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll++ v+++G ++W++Ia+ g++Rt+k+c++rw +yl Potri.001G235500.1 8 KGPWTEKEDILLINFVHLFGDRRWDSIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Potri.001G235500.1 61 RGKMTPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.873 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-30 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-17 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-22 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.65E-12 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 27.508 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-17 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-16 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.44E-12 | 63 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MMQDEIRKGP WTEKEDILLI NFVHLFGDRR WDSIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LVLELHAKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKGAMSPS 120 LSSSNCSSSS NTTTVNSSPL PRTGETSFYD TGGLEQVALA GKNSEAVQGG EKGYSMDDIW 180 KDIENTIEPV CDGFSEKGCN FSCPSLASPS WDYFPDTLWG FGEEEGKIFL PYDDGTTILT 240 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 1 | 110 | 20 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.2779 | 1e-140 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G235500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298375.1 | 0.0 | transcription factor MYB48 isoform X2 | ||||
Swissprot | Q9LX82 | 3e-95 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | B9GES4 | 1e-179 | B9GES4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s24220.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 3e-94 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G235500.1 |
Entrez Gene | 7485724 |
Publications ? help Back to Top | |||
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