PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G231700.1 | ||||||||
Common Name | POPTR_0001s23880g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 433aa MW: 47916.2 Da PI: 8.9601 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 375 | 395 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksF r++ L++H++++ Potri.001G231700.1 375 TCSQCGKSF-RPEKLHSHMKSC 395 6********.**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06136 | 1.7E-41 | 24 | 292 | IPR010369 | Protein of unknown function DUF966 |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MEVSSGIPTS CSSSGAGAGE VRRIHIIYFL SHNLGRIDQH PHLIRVHHSN RNGVYLRDVK 60 RWLADLRGKD MPKAFAWSYK RRYKKGYVWQ DLLDDDLITP ISDNEYVLKG SEILAPPANP 120 YVGSADGEKQ ENTGVEFVEN KAQNHEQRPS PNQICKDTTS RNTSSTEIPK ESPTFTSEIS 180 TVTDDSIEEE EEEEEDACKR NNSRDQEQID NKVEHSSFYT IFLGKSKKNQ DERKDNTSSI 240 EKMGTPSSFP SPSSSQSTFA RSKSYSTGTS KVLRNLITCG AVDTNDAALV LQSQKNKNKY 300 KPIDKPAGHI CKGEELGGSA RVFGTPWNQV QQQRQHNTAI ARKSFDGARS SKKQHNGFGS 360 PKVVSPAYKP VAVPTCSQCG KSFRPEKLHS HMKSCRGLKV LAKAASTYVE KTPSPSHNPV 420 DSASGDGYFL TN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G231700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369486.1 | 0.0 | uncharacterized protein LOC18095011 isoform X2 | ||||
TrEMBL | A0A3N7EDR3 | 0.0 | A0A3N7EDR3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s23880.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8378 | 16 | 20 | Representative plant | OGRP8665 | 3 | 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G231700.1 |
Entrez Gene | 18095011 |