PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G229700.2 | ||||||||
Common Name | POPTR_0001s23680g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 260aa MW: 28946.1 Da PI: 8.3826 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.1e-18 | 78 | 132 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Potri.001G229700.2 78 RKKLRLSKDQSAFLEESFKEHNTLTPKQKLALAKELNLRPRQVEVWFQNRRARTK 132 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.1 | 3.6e-41 | 78 | 168 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l Potri.001G229700.2 78 RKKLRLSKDQSAFLEESFKEHNTLTPKQKLALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-AL 167 69*************************************************************************************9.55 PP HD-ZIP_I/II 92 k 92 k Potri.001G229700.2 168 K 168 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.151 | 74 | 134 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-18 | 76 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.7E-16 | 76 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.07E-15 | 78 | 135 | No hit | No description |
Pfam | PF00046 | 2.0E-15 | 78 | 132 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 78 | 132 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 9.1E-26 | 134 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.5E-11 | 134 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSRGFDVNRF PAVMVHEDQA DQDVAALSSS PPNSATSSFQ MDFCMYSSKG RSESHNEADQ 60 AERASSRASD EDENGSARKK LRLSKDQSAF LEESFKEHNT LTPKQKLALA KELNLRPRQV 120 EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLHKE LQELRALKTS NPFYMQLPAT 180 TLTMCPSCER VATTSTSTAA ATTTTATPTA TAATTTTTTN NQNNTADPTS KTTGLSLGST 240 RPRFYPFSHT QTHPHQHTA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 134 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15578 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G229700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147352 | 0.0 | EF147352.1 Populus trichocarpa clone WS0122_O02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369464.2 | 0.0 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 5e-92 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A2K2C264 | 0.0 | A0A2K2C264_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K2C272 | 0.0 | A0A2K2C272_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s23680.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-83 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G229700.2 |
Entrez Gene | 18094991 |