PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G225400.1

Common Name

POPTR_0001s23260g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 310aa MW: 34414.2 Da PI: 5.5037

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G225400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.7	5.3e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki+++dedv +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ ++fdfl +iv + Potri.001G225400.1 6 DTRFPAVRIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTLNSLHLKQCVQTFNVFDFLREIVSK 86 5789*************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.5E-25	2	72	IPR009072	Histone-fold
Pfam	PF00808	3.0E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	6.01E-19	18	88	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MKKKLDTRFP AVRIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKRGAK 60 TLNSLHLKQC VQTFNVFDFL REIVSKVPDL GGPDVTGDER AVAKRRKVAD DEDNDSDEEC 120 SRNRTNETIQ TSSSGRGRGR GRGRGRGRGR GRGTRSMERE TAAQHGKFED DPDIDHHNDK 180 HCPKLDKDYE PKDSKDNIPA GRNLQAPVRD FDLNAGLDEN GETQPVLASV PSSFSTKSDT 240 VVPASSLTKH DTVVPTSSLT KPDTVVPASS STKPTPELKH EEVHPVQLAN LNTRIEEEEE 300 DYDEEDCSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	151	RGRGRGRGRGR
2	143	152	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G225400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462692.1	0.0	dr1-associated corepressor homolog isoform X1
TrEMBL	A0A2K2C208	0.0	A0A2K2C208_POPTR; Uncharacterized protein
STRING	POPTR_0001s23260.1	1e-155	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-56	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Potri.001G225400.1
Entrez Gene	7486654