PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G224500.3
Common NamePOPTR_0001s23170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 530aa    MW: 57936.6 Da    PI: 6.1994
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G224500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-175198148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT  Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Potri.001G224500.3 51 KGPWTSAEDAILIDYVKKHGEGNWNSVQKHSGLFRCGKSCRLRWANHL 98
                        79******************************************9986 PP
2Myb_DNA-binding50.16.2e-16104147146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eE+ +++++++ +G++ W++ a++++ gRt++++k++w++
  Potri.001G224500.3 104 KGSFTPEEENRIIELHANMGNK-WARMAAELP-GRTDNEIKNYWNT 147
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0484698IPR017930Myb domain
SuperFamilySSF466891.39E-2948145IPR009057Homeodomain-like
SMARTSM007172.9E-1550100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2452105IPR009057Homeodomain-like
CDDcd001675.84E-125398No hitNo description
PfamPF139211.1E-1554114No hitNo description
PROSITE profilePS5129424.21499153IPR017930Myb domain
SMARTSM007177.7E-15103151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-26106151IPR009057Homeodomain-like
CDDcd001675.14E-11106147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MCGRVLWHIH EMSSMMNGTE DNKRSKGRQD SPAADEVNDG GMVGGITPLK KGPWTSAEDA  60
ILIDYVKKHG EGNWNSVQKH SGLFRCGKSC RLRWANHLRP DLKKGSFTPE EENRIIELHA  120
NMGNKWARMA AELPGRTDNE IKNYWNTRTK RLQRAGLPLY PPEVCLRAYK MNKDGQNMGK  180
LQTGDAHDPD MMLTDHFKIP EVEFKTLALN PGVLSYSTGL FDASASSMLK QGVGSSYGQG  240
LVFPTIHPAK RFRESQTIFT GLDGSVSGGI PEFDQFTDYH RGKITGNFGL SSPYGCDLSN  300
YDQSSCGVLP GSHAILNGNS SSSSSSEPIY RATKLELPSL QYSETQQDSW GTPASPLPSL  360
ESVDTFIQSP PTKETKSDGL SPRSSGLLEA VLYESRTLKY SKKCPGHQTS DAFVPIGCGV  420
HSSPLNACAA EWELHADLNS PSGHSASSLF SECTPISGSS SDEQAYNVKP EPIDQVLPYV  480
EAREVLNQTD CNRPDVLLGS TWFAPSNKYH NDQFFQTDDV AALLGGDQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31451511106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G224500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463493.10.0transcription factor GAMYB isoform X1
TrEMBLA0A2K2C1Y90.0A0A2K2C1Y9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.12e-95myb domain protein 65