PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G224500.2
Common NamePOPTR_0001s23170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 554aa    MW: 60474.4 Da    PI: 6.1267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G224500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-174087148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT  Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Potri.001G224500.2 40 KGPWTSAEDAILIDYVKKHGEGNWNSVQKHSGLFRCGKSCRLRWANHL 87
                        79******************************************9986 PP
2Myb_DNA-binding26.31.7e-0893125135
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                         +g++T+eE+ +++++++ +G++ W++ a+++g ++
  Potri.001G224500.2  93 KGSFTPEEENRIIELHANMGNK-WARMAAEVG-NL 125
                         799*******************.********9.76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.2393591IPR017930Myb domain
SMARTSM007172.9E-153989IPR001005SANT/Myb domain
SuperFamilySSF466892.45E-2441117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-244194IPR009057Homeodomain-like
CDDcd001676.35E-124287No hitNo description
PfamPF139211.1E-1543103No hitNo description
SMARTSM007171.0E-892175IPR001005SANT/Myb domain
PROSITE profilePS512948.35492177IPR017930Myb domain
SuperFamilySSF466893.2E-693173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-2195124IPR009057Homeodomain-like
CDDcd001672.97E-595171No hitNo description
Gene3DG3DSA:1.10.10.604.3E-21160175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MSSMMNGTED NKRSKGRQDS PAADEVNDGG MVGGITPLKK GPWTSAEDAI LIDYVKKHGE  60
GNWNSVQKHS GLFRCGKSCR LRWANHLRPD LKKGSFTPEE ENRIIELHAN MGNKWARMAA  120
EVGNLIPDLK CVRIHNVVWE EEIGRRGEIG SSGEKKLPGR TDNEIKNYWN TRTKRLQRAG  180
LPLYPPEVCL RAYKMNKDGQ NMGKLQTGDA HDPDMMLTDH FKIPEVEFKT LALNPGVLSY  240
STGLFDASAS SMLKQGVGSS YGQGLVFPTI HPAKRFRESQ TIFTGLDGSV SGGIPEFDQF  300
TDYHRGKITG NFGLSSPYGC DLSNYDQSSC GVLPGSHAIL NGNSSSSSSS EPIYRATKLE  360
LPSLQYSETQ QDSWGTPASP LPSLESVDTF IQSPPTKETK SDGLSPRSSG LLEAVLYESR  420
TLKYSKKCPG HQTSDAFVPI GCGVHSSPLN ACAAEWELHA DLNSPSGHSA SSLFSECTPI  480
SGSSSDEQAY NVKPEPIDQV LPYVEAREVL NQTDCNRPDV LLGSTWFAPS NKYHNDQFFQ  540
TDDVAALLGG DQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25341751106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G224500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463496.10.0transcription factor GAMYB isoform X2
TrEMBLA0A2K2C2020.0A0A2K2C202_POPTR; Uncharacterized protein
TrEMBLA0A3S9LXE80.0A0A3S9LXE8_POPTO; Transcription factor GAMYB-like isoform X2
STRINGPOPTR_0001s23170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.12e-88myb domain protein 65