PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G220500.2 | ||||||||
Common Name | POPTR_0001s22770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 323aa MW: 36392.7 Da PI: 9.6224 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.1 | 2.9e-22 | 18 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvka.eekewyfFskrdkkyatgkrknra.....t 78 +p G+rF P+de lv +yL kk ++++l++ +++e+d+y eP+++ k k k ++ ++fF++ +kk+ t++ ++r+ Potri.001G220500.2 18 MPTGCRFAPSDEVLVIHYLSKKGKNEPLPCPYAVRECDLYGREPEEIWKefggdrlKRKIdQDLGLFFFTRLKKKSGTDHGSSRIdrsvgN 108 699***************************889**************7546777652222234488**********998877775344444 PP NAM 79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + g+W++ ++++++ +++++g kk +v+ ++++++ + +W m e +l Potri.001G220500.2 109 NIGTWHEECALRSITCSeTKKNIGSKKRFVYKSNKSHNRGRVSWHMLEISL 159 589***********99867788**********99999999******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-23 | 12 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.348 | 18 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-13 | 19 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MQDSNDPARR YGLVQRQMPT GCRFAPSDEV LVIHYLSKKG KNEPLPCPYA VRECDLYGRE 60 PEEIWKEFGG DRLKRKIDQD LGLFFFTRLK KKSGTDHGSS RIDRSVGNNI GTWHEECALR 120 SITCSETKKN IGSKKRFVYK SNKSHNRGRV SWHMLEISLP DNTSDHVVCQ LKRKERNSIK 180 SGRGDAGVLE NGNGEGAQKR QRTVSWTNQE AGPSFFNSNK TPESYEAKRN STVCGKEMGA 240 SIDGGHSFDL NIEWTNPDED DTYTSHKERQ PHFSSGKKMT EIASSSLASL ETGKSTNHVK 300 NAKKTLRFDV NIITFFHPTT TP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G220500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC184074 | 0.0 | AC184074.2 Populus trichocarpa clone Pop1-51H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464534.1 | 0.0 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A3N7FCU8 | 0.0 | A0A3N7FCU8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22770.1 | 1e-172 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 4e-13 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G220500.2 |
Entrez Gene | 7467968 |