PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G220500.1
Common NamePOPTR_0001s22770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 400aa    MW: 44478.3 Da    PI: 8.6978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G220500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.44.7e-22181591128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvka.eekewyfFskrdkkyatgkrknra.....t 78 
                         +p G+rF P+de lv +yL kk ++++l++  +++e+d+y  eP+++ k       k k  ++  ++fF++ +kk+ t++ ++r+      
  Potri.001G220500.1  18 MPTGCRFAPSDEVLVIHYLSKKGKNEPLPCPYAVRECDLYGREPEEIWKefggdrlKRKIdQDLGLFFFTRLKKKSGTDHGSSRIdrsvgN 108
                         699***************************889**************7546777652222234488**********998877775344444 PP

                 NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + g+W++    ++++++ +++++g kk +v+ ++++++  + +W m e +l
  Potri.001G220500.1 109 NIGTWHEECALRSITCSeTKKNIGSKKRFVYKSNKSHNRGRVSWHMLEISL 159
                         589***********99867788**********99999999******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-2312174IPR003441NAC domain
PROSITE profilePS5100526.34818174IPR003441NAC domain
PfamPF023657.7E-1319158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MQDSNDPARR YGLVQRQMPT GCRFAPSDEV LVIHYLSKKG KNEPLPCPYA VRECDLYGRE  60
PEEIWKEFGG DRLKRKIDQD LGLFFFTRLK KKSGTDHGSS RIDRSVGNNI GTWHEECALR  120
SITCSETKKN IGSKKRFVYK SNKSHNRGRV SWHMLEISLP DNTSDHVVCQ LKRKERNSIK  180
SGRGDAGVLE NGNGEGAQKR QRTVSWTNQE AGPSFFNSNK TLESYDEAKR NSSGSGKEML  240
ASNSIESGRG DAGVENGNDQ GAQKRQRTVS WTNQEAGPSF FNSNKTPESY EAKRNSTVCG  300
KEMGASIDGG HSFDLNIEWT NPDEDDTYTS HKERQPHFSS GKKMTEIASS SLASLETDSD  360
AKDDLLKGGN GLLRVLKLRV TEATGYPCEI ILFASQVSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G220500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840740.0AC184074.2 Populus trichocarpa clone Pop1-51H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464534.10.0NAC domain-containing protein 83
TrEMBLA0A3N7FCU80.0A0A3N7FCU8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-13NAC domain containing protein 32