PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G219100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25759.6 Da PI: 6.873 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.5e-08 | 7 | 52 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W+ Ed+++ +a +++ + +W++I+++++ g++ +++ ++ + Potri.001G219100.1 7 SWSRLEDKQFEQALVLFPEEtprRWEKISSYVP-GKSWREVRKHYED 52 6*****************99*************.***********76 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.7e-14 | 106 | 150 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r Rt+ q+ s+ qky Potri.001G219100.1 106 PWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 150 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.497 | 1 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-9 | 4 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-7 | 7 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.8E-11 | 7 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.98E-7 | 7 | 54 | No hit | No description |
PROSITE profile | PS51294 | 19.445 | 99 | 155 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-17 | 100 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 103 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 103 | 149 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-17 | 103 | 153 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-11 | 106 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.78E-9 | 106 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSSHLSSWSR LEDKQFEQAL VLFPEETPRR WEKISSYVPG KSWREVRKHY EDLVHDVLEI 60 DSGRVEVPLY DQDELWGDST TSLGGAAAES RSGKEREHTE RRKGTPWTEE EHRLFLIGLQ 120 KYGKGDWRSI SRNAVVSRTP TQVASHAQKY FLRLNSVKKE KKRSSIHDIT ATNATHSMAQ 180 TSHDPNWNFE LMDQSVDEPL SRPANFFHDQ GNPLAYQGFG FPM* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G219100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461788.1 | 1e-166 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 2e-59 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2K2C1N6 | 1e-165 | A0A2K2C1N6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22660.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 9e-73 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G219100.1 |
Publications ? help Back to Top | |||
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