PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G218800.1 | ||||||||
Common Name | POPTR_0001s22630g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 27872 Da PI: 5.712 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.1 | 3.7e-45 | 4 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp G+rF Pt+eel+++yL++k+ g + +l++vi+++ iy++ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkat Potri.001G218800.1 4 LPLGYRFYPTEEELISFYLHNKLGGGRqERLQRVIPDISIYDIEPWDLPKlsgeLCQGDTEQWFFFTPRQEREARGGRPNRTTASGYWKAT 94 699********************99993445667***************656754455777****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++++glkkt+vfy+g+ap+g+kt+W m+eyr+ Potri.001G218800.1 95 GSPGYVYSSDNRVIGLKKTMVFYTGKAPRGRKTKWKMNEYRA 136 ****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-49 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.322 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-23 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEELPLGYRF YPTEEELISF YLHNKLGGGR QERLQRVIPD ISIYDIEPWD LPKLSGELCQ 60 GDTEQWFFFT PRQEREARGG RPNRTTASGY WKATGSPGYV YSSDNRVIGL KKTMVFYTGK 120 APRGRKTKWK MNEYRAIEVH ESSSNATPKL RHEFSLCRVY VVSGSFRAFD RRPLEAVTRE 180 TQLLGDGATT SAQGPDPTVD MTSSPETSYS VEDHVDHPGT AASANWGSVD GLEPPAWEWP 240 GQLDWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-36 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-36 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-36 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-36 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 2e-36 | 4 | 160 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 2e-36 | 4 | 160 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G218800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298277.2 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-92 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2K2C1M7 | 0.0 | A0A2K2C1M7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22630.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-95 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G218800.1 |
Entrez Gene | 7478502 |
Publications ? help Back to Top | |||
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