PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G208600.1
Common NamePOPTR_0001s21580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 520aa    MW: 56514 Da    PI: 6.2835
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G208600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.71.3e-24262317159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt + gCpv+    r+ ed +++++tYeg+Hnh+
  Potri.001G208600.1 262 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpGCPVQ----RCLEDMSILITTYEGTHNHP 317
                         58**************************999**965....5777899************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-26247319IPR003657WRKY domain
SuperFamilySSF1182906.41E-23255319IPR003657WRKY domain
PROSITE profilePS5081124.088257319IPR003657WRKY domain
SMARTSM007743.7E-30262318IPR003657WRKY domain
PfamPF031062.7E-21263317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDTDLSLKID AESEVEEDGD EERRHGKKGG GNHQEEEVDG QNIQDTSEAA GATTTRGGGG  60
GGGGGAEDDS SLLENMKTEE LSGLQMEISR MKEENKVLRR TVEKTMKDYH DLRMRFASFQ  120
QNMDQKKDPQ ISLGLNANDN KAVQEVPKAI IPRQSGSSYI QRHQAAASTK GDTVGEGELG  180
LSLRLQITST SQQEREEDME ENNKEDQTAN HAPTISQNNN NNNKNNNQRT DLGGAGITAH  240
GASLANRKAR VSVRARCQAA TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV SPGCPVQRCL  300
EDMSILITTY EGTHNHPLPV GATAMASTAS AAASFMLLNS SNPLSDGMIT TGQANSLPYH  360
AWNPQYSSNF RSINPNDPSK GIVLDLTHDR DRSLLQYPMM ASSSQYSSSS ASHNQYPSSF  420
SNWMQSRSSS YQNSAANVHG SNFAGHRVQE EKLLMAENVT AIASDPKFRV AVAAAITSLI  480
NKENSSSHPI EPSLISRDGE RGSPTCKQQQ QQQQQLSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19249321176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G208600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466667.10.0probable WRKY transcription factor 9
TrEMBLB9GF770.0B9GF77_POPTR; Uncharacterized protein
STRINGPOPTR_0001s21580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-59WRKY DNA-binding protein 9