PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G196400.1 | ||||||||
Common Name | POPTR_0001s20110g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 279aa MW: 31563.2 Da PI: 5.281 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.4e-40 | 14 | 112 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am+++++++++ra+dPv G++++i++lq+q+e ++ Potri.001G196400.1 14 ACAACKYQRRKCAPDCILAPYFPHNRQRQFLNAHKLFGVSNISKIIKNLNPPEKDEAMRTIIFQSDVRANDPVGGCYRMIRELQRQIEYTR 104 7****************************************************************************************** PP DUF260 92 aelallke 99 ael+ + + Potri.001G196400.1 105 AELDIALH 112 **998766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.972 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-37 | 14 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MTNISRTGNS TTQACAACKY QRRKCAPDCI LAPYFPHNRQ RQFLNAHKLF GVSNISKIIK 60 NLNPPEKDEA MRTIIFQSDV RANDPVGGCY RMIRELQRQI EYTRAELDIA LHQVALYRAQ 120 AAAQQQTQLI QTAAAAAAGP DHQTDHDDST RLDCENIIIT DTFDMYDTVV MQYHDQYPQS 180 HQDQQEFVIY NQAHLQEDHA NPNAWAAVPV QDINPCLSIS SATYLDDFNQ ANYNGNDQCI 240 MHGDMKPLLD VRNVNFEPDR DSLVDTRFVP STQLLISS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-27 | 15 | 117 | 12 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-27 | 15 | 117 | 12 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G196400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC214863 | 0.0 | AC214863.1 Populus trichocarpa clone POP082-J22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369248.1 | 0.0 | LOB domain-containing protein 22 | ||||
TrEMBL | B9N2X9 | 0.0 | B9N2X9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s20110.1 | 1e-153 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 | Representative plant | OGRP5524 | 10 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-58 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G196400.1 |
Entrez Gene | 18094816 |