PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G184100.4 | ||||||||
Common Name | POPTR_0001s18470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 715aa MW: 79888.4 Da PI: 6.2992 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 2e-21 | 60 | 115 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Potri.001G184100.4 60 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 115 7999************************************************9877 PP | |||||||
2 | START | 224.5 | 3.2e-70 | 230 | 453 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 a++a++el k+a+a+ep+W +s+ e++n+de+++ f ++++ +s+ea+r++gvv+ ++++lv++++d+ qW+e+++ k Potri.001G184100.4 230 ANQAMEELKKMATAGEPLWIRSVetgrEILNYDEYTKVFGSEDSsingrpkRSIEASRETGVVFIDVPRLVQSFMDVD-QWKEMFPclisK 319 7899***********************************88777999*******************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a+t++vi++g ga+qlm+ae q+l+p+vp R+++fvRy++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+ Potri.001G184100.4 320 AATVDVICNGegasrnGAVQLMFAEVQMLTPMVPtREVYFVRYCKQLNAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHC 409 ****************************************************************98.9*********************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kv+wveh ++++++h ++r +v+sgl +ga++w+atlq qce+ Potri.001G184100.4 410 KVIWVEHLQCQKSTVHTMYRTVVHSGLTFGARHWMATLQLQCER 453 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 46 | 111 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.13E-21 | 48 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.22 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-19 | 59 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.5E-19 | 60 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.14E-16 | 67 | 115 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.742 | 219 | 456 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.18E-33 | 221 | 453 | No hit | No description |
CDD | cd08875 | 1.63E-110 | 223 | 452 | No hit | No description |
SMART | SM00234 | 6.9E-71 | 228 | 453 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.5E-5 | 229 | 264 | IPR023393 | START-like domain |
Pfam | PF01852 | 4.1E-56 | 230 | 453 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.5E-5 | 338 | 448 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.61E-13 | 484 | 688 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MEVEEGEEGS GGGRREETVE ISSENSGPMR SKSDDDFEGE GEHDHEDDDD GDDKNKKKKR 60 KKYHRHTAEQ IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR RTQIKAIQER 120 HENSLLKSEM DKLREDNKSM RETINKACCP NCGTATTSRD AALTSTEEQQ LRIENAKLKA 180 EVEKLRAVVG KSSPGATASC SAGNEQENRS SLDFYTGIFG LDKSRIMETA NQAMEELKKM 240 ATAGEPLWIR SVETGREILN YDEYTKVFGS EDSSINGRPK RSIEASRETG VVFIDVPRLV 300 QSFMDVDQWK EMFPCLISKA ATVDVICNGE GASRNGAVQL MFAEVQMLTP MVPTREVYFV 360 RYCKQLNAEQ WAIVDVSIDK VEDNIDASLV KCRKRPSGCI IEDKSNGHCK VIWVEHLQCQ 420 KSTVHTMYRT VVHSGLTFGA RHWMATLQLQ CERLVFFMAT NVPTKDSTGV ATLAGRKSIL 480 KLAQRMTWSF CRAICASSYH TWNKVSSKTG EDIRVSSRKN LNDPGEPVGV ILCAVSSVWL 540 PVVPHILFDF LRDEARRNEW DIMSNGGPVQ TIANLIKGQD RGNAAAILKM KSKENNMWVL 600 QDSCTNAYES MIVYAPVDTN GMQSVITGCD SSNLAILPSG FSILPDGHES RPLVITSRQE 660 ERSTEGGCLL TIAFQILTNT SPTAKPTMES VDSINTLISC TLKNIKTSLQ CEDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 60 | KKKKRK |
2 | 55 | 61 | KKKKRKK |
3 | 57 | 61 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.13165 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G184100.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462179.1 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A2K2BZS9 | 0.0 | A0A2K2BZS9_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K2BZT8 | 0.0 | A0A2K2BZT8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s18470.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G184100.4 |
Entrez Gene | 7470559 |
Publications ? help Back to Top | |||
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