PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G184100.3 | ||||||||
Common Name | POPTR_0001s18470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 758aa MW: 84236.3 Da PI: 6.2604 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.2e-21 | 103 | 158 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Potri.001G184100.3 103 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 158 7999************************************************9877 PP | |||||||
2 | START | 224.4 | 3.5e-70 | 273 | 496 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 a++a++el k+a+a+ep+W +s+ e++n+de+++ f ++++ +s+ea+r++gvv+ ++++lv++++d+ qW+e+++ k Potri.001G184100.3 273 ANQAMEELKKMATAGEPLWIRSVetgrEILNYDEYTKVFGSEDSsingrpkRSIEASRETGVVFIDVPRLVQSFMDVD-QWKEMFPclisK 362 7899***********************************88777999*******************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a+t++vi++g ga+qlm+ae q+l+p+vp R+++fvRy++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+ Potri.001G184100.3 363 AATVDVICNGegasrnGAVQLMFAEVQMLTPMVPtREVYFVRYCKQLNAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHC 452 ****************************************************************98.9*********************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kv+wveh ++++++h ++r +v+sgl +ga++w+atlq qce+ Potri.001G184100.3 453 KVIWVEHLQCQKSTVHTMYRTVVHSGLTFGARHWMATLQLQCER 496 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 89 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-21 | 91 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.22 | 100 | 160 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-19 | 102 | 164 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-18 | 103 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.81E-17 | 110 | 158 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.742 | 262 | 499 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.87E-33 | 264 | 496 | No hit | No description |
CDD | cd08875 | 4.08E-110 | 266 | 495 | No hit | No description |
SMART | SM00234 | 6.9E-71 | 271 | 496 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.1E-5 | 272 | 307 | IPR023393 | START-like domain |
Pfam | PF01852 | 4.6E-56 | 273 | 496 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.1E-5 | 381 | 491 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.02E-13 | 527 | 731 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 758 aa Download sequence Send to blast |
MGVDMSNPPN SHIKDFFASP ALSLSLAGIF RGANVCNGEA AASMEVEEGE EGSGGGRREE 60 TVEISSENSG PMRSKSDDDF EGEGEHDHED DDDGDDKNKK KKRKKYHRHT AEQIREMEAL 120 FKESPHPDEK QRQQLSKQLG LAPRQVKFWF QNRRTQIKAI QERHENSLLK SEMDKLREDN 180 KSMRETINKA CCPNCGTATT SRDAALTSTE EQQLRIENAK LKAEVEKLRA VVGKSSPGAT 240 ASCSAGNEQE NRSSLDFYTG IFGLDKSRIM ETANQAMEEL KKMATAGEPL WIRSVETGRE 300 ILNYDEYTKV FGSEDSSING RPKRSIEASR ETGVVFIDVP RLVQSFMDVD QWKEMFPCLI 360 SKAATVDVIC NGEGASRNGA VQLMFAEVQM LTPMVPTREV YFVRYCKQLN AEQWAIVDVS 420 IDKVEDNIDA SLVKCRKRPS GCIIEDKSNG HCKVIWVEHL QCQKSTVHTM YRTVVHSGLT 480 FGARHWMATL QLQCERLVFF MATNVPTKDS TGVATLAGRK SILKLAQRMT WSFCRAICAS 540 SYHTWNKVSS KTGEDIRVSS RKNLNDPGEP VGVILCAVSS VWLPVVPHIL FDFLRDEARR 600 NEWDIMSNGG PVQTIANLIK GQDRGNAAAI LKMKSKENNM WVLQDSCTNA YESMIVYAPV 660 DTNGMQSVIT GCDSSNLAIL PSGFSILPDG HESRPLVITS RQEERSTEGG CLLTIAFQIL 720 TNTSPTAKPT MESVDSINTL ISCTLKNIKT SLQCEDS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 98 | 103 | KKKKRK |
2 | 98 | 104 | KKKKRKK |
3 | 100 | 104 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.13165 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G184100.3 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462179.1 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A2K2BZS9 | 0.0 | A0A2K2BZS9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s18470.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G184100.3 |
Entrez Gene | 7470559 |
Publications ? help Back to Top | |||
---|---|---|---|
|