PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G181500.1
Common NamePOPTR_0001s18180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 181aa    MW: 19732 Da    PI: 5.2649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G181500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-181565155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr +k +g+Wv+eIr+p +   ++r++lg+f t+e+Aa+a++ a++ ++g
  Potri.001G181500.1 15 SSYTGVRKRK-WGKWVSEIREPEK---KTRIWLGSFETPEMAAAAYDVAALHFRG 65
                        679****999.**********733...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-111565IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-211574IPR016177DNA-binding domain
CDDcd000181.40E-211575No hitNo description
SMARTSM003802.8E-351679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-311674IPR001471AP2/ERF domain
PROSITE profilePS5103222.7481673IPR001471AP2/ERF domain
PRINTSPR003673.8E-91728IPR001471AP2/ERF domain
PRINTSPR003673.8E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEGRNSTAHH GGIASSYTGV RKRKWGKWVS EIREPEKKTR IWLGSFETPE MAAAAYDVAA  60
LHFRGCEAKL NFPELAGKLP MPASSSADHI RMAAHQAAVS LRPSTVDSSQ GGSSSSNVGP  120
ITVRLSPSQI QAIHESPLDS PKMWMQMAEI ATLEESSMMF SDDIEDDEWD NNQTDSLWGP  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161773663ATERF1
3gcc_A1e-161773663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G181500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299698.11e-132ethylene-responsive transcription factor ERF021
SwissprotQ9C9I25e-62ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLB9GFN91e-130B9GFN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18180.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-61ERF family protein