PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G170200.8
Common NamePOPTR_0001s17020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 537aa    MW: 59351.5 Da    PI: 9.2096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G170200.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.6e-09421469348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Potri.001G170200.8 421 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 469
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225414473IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-13416475IPR009057Homeodomain-like
SMARTSM007172.9E-9418471IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-16420479IPR009057Homeodomain-like
CDDcd116601.70E-19420470No hitNo description
PfamPF002496.1E-7421469IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MLQKVKEEER LYIACGSPDC SSAYVIVDSQ CSDPHDKLLH IDEKLQCEIP LQEPVPLLAP  60
SLSESHLNQS GSVGECSHPP DELVAGGSPS SITTKPDFSR LKGEICLDNL SIKELHETFK  120
ATFGRETTVK DKQWLKRRIS MGLTNSCDVS TTSFIIKGNK FVKKGNEEGC NGIYGSFAKD  180
PPIVNQKGLP TCHVGQLDYH KVVPERRLEN HNLDDNSGSD DHQKEQRAAK RVRKPTKRYI  240
EELSEVESKE SNERLLNLAK NSGHDGLISP KSHVRLVRHV SSGGRTVITR LDSLGGSGIQ  300
VPCVSRVRRS RPRKNFMALL KFNPSSMGMA AALVEKALDD HGFPPDDGNE NRVLKASSTP  360
EHVHHQFVGV PEKDKQFSVM SVVGLGNNTD LKCMNSNEDS DDNVVTVPTS KGGIRRKHHR  420
AWTLSEVMKL VEGVSRYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLK ASFAQTPPDT  480
GMNSRKNTGA MPIPTPILLK VRELAEMQAQ VPPNLSLTKV AGSARKIVHE KQTGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307313RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G170200.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298100.20.0uncharacterized protein LOC7478109 isoform X2
TrEMBLB9GKV60.0B9GKV6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17020.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-111TRF-like 6