PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G170200.6
Common NamePOPTR_0001s17020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 548aa    MW: 60285.4 Da    PI: 9.6587
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G170200.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09432480348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Potri.001G170200.6 432 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 480
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225425484IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-13427486IPR009057Homeodomain-like
SMARTSM007172.9E-9429482IPR001005SANT/Myb domain
CDDcd116603.37E-19431481No hitNo description
SuperFamilySSF466893.74E-16431490IPR009057Homeodomain-like
PfamPF002496.2E-7432480IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MEVESLLIDD RCGKHVVADP GQTVGCISNE GSSSGMAQLK RLEGWSQPEN KKVDPDKLNG  60
RLEEPVPLLA PSLSESHLNQ SGSVGECSHP PDELVAGGSP SSITTKPDFS RLKGEICLDN  120
LSIKELHETF KATFGRETTV KDKQWLKRRI SMGLTNSCDV STTSFIIKGN KFVKKGNEEG  180
CNGIYGSFAK DPPIVNQKGL PTCHVGQLDY HKVVPERRLE NHNLDDNSGS DDHQKEQRAA  240
KRVRKPTKRY IEELSEVESK ESNERLLNLA KNSGHDGLIS PKSHVRLVRH VSSGGRTVIT  300
RLDSLGGSGI QVPCVSRVRR SRPRKNFMAL LKFNPSSMGM AAALVEKALD DHGFPPDDGN  360
ENRVLKASST PEHVHHQFVG VPEKDKQFSV MSVVGLGNNT DLKCMNSNED SDDNVVTVPT  420
SKGGIRRKHH RAWTLSEVMK LVEGVSRYGA GRWSEIKRLA FASYSYRTSV DLKDKWRNLL  480
KASFAQTPPD TGMNSRKNTG AMPIPTPILL KVRELAEMQA QVPPNLSLTK VAGSARKIVH  540
EKQTGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318324RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G170200.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292444e-62CT029244.1 Poplar cDNA sequences.
GenBankCT0292454e-62CT029245.1 Poplar cDNA sequences.
GenBankCT0295444e-62CT029544.1 Poplar cDNA sequences.
GenBankCT0295454e-62CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441958.10.0uncharacterized protein LOC7478109 isoform X4
TrEMBLA0A2K2BZ220.0A0A2K2BZ22_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17020.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-107TRF-like 6