PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G170200.4
Common NamePOPTR_0001s17020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 511aa    MW: 56265.9 Da    PI: 9.5481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G170200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09395443348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Potri.001G170200.4 395 TWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 443
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.795388447IPR017930Myb domain
SMARTSM007171.5E-9392445IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-12394449IPR009057Homeodomain-like
SuperFamilySSF466895.23E-16395453IPR009057Homeodomain-like
PfamPF002496.2E-7395443IPR001005SANT/Myb domain
CDDcd116602.07E-18396444No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
METEVGVEGN DEAKHKECGI RKSSSSLSSP KQISDPVVYK LVRVEGDGRL VPATDDELME  60
VESLLIDDRC GKHVVADPGQ TVGCISNEGS SSGMAQLKRL EGWSQPENKK VDPDKLNGRL  120
EEPVPLLAPS LSESHLNQSG SVGECSHPPD ELVAGGSPSS ITTKPDFSRL KGEICLDNLS  180
IKELHETFKA TFGRETTVKD KQWLKRRISM GLTNSCDVST TSFIIKGNKF VKKGNEEGCN  240
GIYGSFAKDP PIVNQKGLPT CHVGQLDYHK VVPERRLENH NLDDNSGSDD HQKEQRAAKR  300
VRKPTKRYIE ELSEVESKES NERLLNLAKN SGHDGLISPK SHVRLVRHVS SGGRTVITRL  360
DSLGGSGIQV PCVSRVRRSR PRKNFMALLK FNPSTWTLSE VMKLVEGVSR YGAGRWSEIK  420
RLAFASYSYR TSVDLKDKWR NLLKASFAQT PPDTGMNSRK NTGAMPIPTP ILLKVRELAE  480
MQAQVPPNLS LTKVAGSARK IVHEKQTGFL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376382RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G170200.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-158CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-158CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-158CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035704.10.0PREDICTED: uncharacterized protein LOC105133411 isoform X2
TrEMBLA0A2K2BZ220.0A0A2K2BZ22_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17020.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.16e-65TRF-like 6