PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G169500.1
Common NamePOPTR_0001s16960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 549aa    MW: 60658.3 Da    PI: 6.9757
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G169500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15266325155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.001G169500.1 266 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 325
                         78*******************655454478446*************************98 PP
2AP248.32.4e-15368419155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.001G169500.1 368 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 419
                         78****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.79E-22266334No hitNo description
PfamPF008475.0E-12266325IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-17266334IPR016177DNA-binding domain
SMARTSM003802.2E-29267339IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-16267333IPR001471AP2/ERF domain
PROSITE profilePS5103219.177267333IPR001471AP2/ERF domain
PRINTSPR003672.4E-6268279IPR001471AP2/ERF domain
PfamPF008474.3E-10368419IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-17368428IPR016177DNA-binding domain
CDDcd000181.89E-24368429No hitNo description
SMARTSM003803.7E-32369433IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18369427IPR001471AP2/ERF domain
PROSITE profilePS5103218.769369427IPR001471AP2/ERF domain
PRINTSPR003672.4E-6409429IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSNLSPHLRV DEDFGREDQA ASFSVMPLLS DGSLCVADPF RRPSNGTPDW RYENTMDEGR  60
ISEDGPKLED FLGCYSNSPS DETEVHCQQE DHHINQNHAN RINPNLAPSF NTNKDIETGK  120
NSLTSHSSFI QSYHFNDNAQ TLIPSDSLQH CDPNPSHSRS HSNSHNHNQE TGMYHVPFES  180
ASSFSGFKSW LRQTSTPFSS SGESPNEANN CNFQSLSLTV SPSSQNGLVA ISPLQVVDNS  240
IRPVAKSLAK KPVSRKSIET FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ  300
VYLGGYDKEE KAARAYDLAA LKYWGPTTHI NFPVGTYEKE LEEMEHMTRQ EFVANLRRKS  360
SGFSRGASVY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGA  420
SAVTNFGISR YDVKRICSSS TLIASDLAKR SSKDSTPTTL EDYNSCASSS SISPQPLLAI  480
AGCEASDELP DMAWSANRWE SQQQQSVNNN SNDSTLMASS SRNSSNAASP KCSVGLTSDF  540
GHGGGSYS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G169500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459631.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-135AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2K2BZ110.0A0A2K2BZ11_POPTR; Uncharacterized protein
STRINGPOPTR_0001s16960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-130AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]