PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G163700.3 | ||||||||
Common Name | POPTR_0001s16400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 32354.9 Da PI: 4.5197 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Potri.001G163700.3 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 165 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-19 | 116 | 168 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-29 | 116 | 174 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.97E-28 | 116 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-28 | 116 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 116 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-12 | 117 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-12 | 117 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-12 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MCGGAIISDF IPPTTTARSS RRFAEGFEWF GMKKPLDNKK YSKPVVINLD DDFEADFQEF 60 KDESDVDENY DVFVDAKPFS FSATASAPAK KRSAPVKSAE FSGQAEKSAK RKRKNQYRGI 120 RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDAEA RRIRGKKAKG SNSFDCDFGW 180 GEQTPMTPES LTVLAATPEA DEYLLANPEE LESYSENAVP VEEKNGKSLS EELLAFDSQL 240 KYLQMPDAEG SSWEASLDSF LNVETTQDGT NAMDLWSFDD FPSMVGGVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-18 | 116 | 168 | 5 | 58 | ATERF1 |
3gcc_A | 8e-18 | 116 | 168 | 5 | 58 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3713 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G163700.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369093.1 | 1e-117 | ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q6K7E6 | 3e-41 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | B9N7H5 | 1e-116 | B9N7H5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s16400.1 | 1e-117 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 9e-34 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G163700.3 |
Entrez Gene | 18094682 |