PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G163700.1
Common NamePOPTR_0001s16400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 379aa    MW: 42074.6 Da    PI: 4.5259
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G163700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19116165255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Potri.001G163700.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 165
                         69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-22116175IPR016177DNA-binding domain
CDDcd000184.65E-33116174No hitNo description
SMARTSM003804.3E-36116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-32116175IPR001471AP2/ERF domain
PROSITE profilePS5103224.092116173IPR001471AP2/ERF domain
PRINTSPR003671.1E-11117128IPR001471AP2/ERF domain
PfamPF008478.5E-12117165IPR001471AP2/ERF domain
PRINTSPR003671.1E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MCGGAIISDF IPPTTTARSS RRFAEGFEWF GMKKPLDNKK YSKPVVINLD DDFEADFQEF  60
KDESDVDENY DVFVDAKPFS FSATASAPAK KRSAPVKSAE FSGQAEKSAK RKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDAEA RRIRGKKAKV NFPDEAPLAS  180
SKQSIKENSR KPLPKTNSSQ SFSYLSNPEL NYNNMGFVEE KPLVNQFGSM NSFPVNGDSG  240
MKTLAPSDSA PMCFNSDQGS NSFDCDFGWG EQTPMTPESL TVLAATPEAD EYLLANPEEL  300
ESYSENAVPV EEKNGKSLSE ELLAFDSQLK YLQMPDAEGS SWEASLDSFL NVETTQDGTN  360
AMDLWSFDDF PSMVGGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-211151811380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.37130.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G163700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369093.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLB9N7H50.0B9N7H5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s16400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.24e-71related to AP2 12