PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G157700.1
Common NamePOPTR_0001s15790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 315aa    MW: 35012.4 Da    PI: 6.2757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G157700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015250272123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C ++F +   L  H r+H
  Potri.001G157700.1 250 FECPYCLRVFGSGQALGGHKRSH 272
                         89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.6E-6328IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829431IPR007087Zinc finger, C2H2
SMARTSM003550.19426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM0035554207227IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.98E-5207272No hitNo description
PfamPF139120.1207227IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224207237IPR007087Zinc finger, C2H2
SMARTSM003550.25250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515250272IPR007087Zinc finger, C2H2
PfamPF139122.3E-12250273IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MERHKCRLCV RTFPNGRALG GHMKAHLAAT RPQLGLDLQE EQEIIKIKEA VEEKSLAYGL  60
RENPKKSCRL ADPEFSFAVD TGSVVVQDRE SETESRNPTR RRSKRIRKSC GFGESQKQDF  120
DVKKVVDFKN PSWGESSSPA EPEPVSSVSD TSPEEDVARC LMMLSRDVWM RNDEEEVQEQ  180
GGKDGEKSVD MLEEAEEIKV NKIRGKFRCE KCMKLFRSSR ALSGHKRICS LNATEARNIA  240
AAGDANDRIF ECPYCLRVFG SGQALGGHKR SHLIGSSTST NAVAEVSTKL ENNMIDLNLP  300
APVEDDEFSV VSDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G157700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463000.10.0zinc finger protein ZAT9
TrEMBLU5GPT80.0U5GPT8_POPTR; C2H2 family protein
STRINGPOPTR_0001s15790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-50C2H2-like zinc finger protein