PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G157100.1 | ||||||||
Common Name | POPTR_0001s15710g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30561.2 Da PI: 5.742 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.6e-19 | 26 | 74 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Potri.001G157100.1 26 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 74 56******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.32E-31 | 25 | 81 | No hit | No description |
SMART | SM00380 | 1.4E-34 | 25 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.719 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 26 | 37 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-21 | 26 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-29 | 26 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-12 | 28 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MNPSSSNRKK KQPQQVQQEP GTGLRFLGVR RRPWGRYAAE IRDPSTKERH WLGTFDTAEE 60 AALAYDRAAR SMRGSRARTN FVYSDMPAGS FVTSIISPDE QQSLQQQQHQ QHSDNNNNLS 120 SLFINVPPSH DHQPDSTPIF NQDFSSQCHL EEGFSSMTSG GGFWSCSSNN TYNQQLKHVI 180 QNNVLPHDFP SNISHSSDYN MSQCSWTDSS TSGLMGFEDQ TTMTSGFESV GSSSGSYFGF 240 DSGEYVHSPL FSRMPPVSDM VPDGFDLGSS AYFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 26 | 81 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-21 | 23 | 81 | 3 | 62 | ATERF1 |
3gcc_A | 6e-21 | 23 | 81 | 3 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G157100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369014.2 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | B9MUQ1 | 0.0 | B9MUQ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s15710.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 4e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G157100.1 |
Entrez Gene | 18094615 |