PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G155700.1
Common NamePOPTR_0001s15550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 253aa    MW: 28101 Da    PI: 6.1648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G155700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-1871122156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         + y+GVr +  +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++ a++ ++g+
  Potri.001G155700.1  71 PSYRGVRMRQ-WGKWVSEIRQPKK---KSRIWLGTFPTPEMAARAHDVAALTIKGH 122
                         57*****998.**********854...6***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1271122IPR001471AP2/ERF domain
CDDcd000181.34E-3371131No hitNo description
Gene3DG3DSA:3.30.730.105.2E-3272130IPR001471AP2/ERF domain
SMARTSM003801.6E-3772135IPR001471AP2/ERF domain
PROSITE profilePS5103223.02472129IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2172130IPR016177DNA-binding domain
PRINTSPR003673.0E-107384IPR001471AP2/ERF domain
PRINTSPR003673.0E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
METSLNIQCD AQTSAFSSSS ITSSFSSFPS PMKNSRKQDQ SQDSSKRNQD PKNNNESNKK  60
AKSGGNAGRH PSYRGVRMRQ WGKWVSEIRQ PKKKSRIWLG TFPTPEMAAR AHDVAALTIK  120
GHSAHLNFPE LAHEFPRPAS SSPKDIQAAA ALAATLSCKT SQKGRETEAE DELMLPHSPD  180
STLASNETQE YSLSSPLRDD GDDTFIDLPD ILQDQYQFDE FCYLSSWQLV GPETSDIGFW  240
HQEEPFGNIP FK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1765135775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G155700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559270.0EF155927.1 Populus trichocarpa TINY-like protein (TINYL8) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368997.20.0ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ73e-53ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2K2BY830.0A0A2K2BY83_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]