PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G150600.1

Common Name

POPTR_0001s15070g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 472aa MW: 52310 Da PI: 8.2865

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G150600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.7	3.9e-15	16	93	1	82
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +Wt++e laLi+a+ +++ +++rg+l++++We+v+ ++ +s+ qC++k+e+l+kry+ +k+ + + s++ +f Potri.001G150600.1 16 CWTRDESLALIKAYCDKWYSVNRGNLRAADWEAVAVAVP----PKSSLQCRHKIEKLRKRYRVEKQKCLEYPGQFFSSWDLF 93 8*********************************997....589**************99987655555555556555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-14	15	99	No hit	No description
PROSITE profile	PS50090	6.051	17	69	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
METTPCATPK RVPPPCWTRD ESLALIKAYC DKWYSVNRGN LRAADWEAVA VAVPPKSSLQ 60 CRHKIEKLRK RYRVEKQKCL EYPGQFFSSW DLFPLLDSLE IGSLGSKGDQ EIDKGNDVGD 120 GFRVKTLGDR YLLTTQKNGK TNGDLDPDED FGLDPDLAFR AAKYSKVHGG FNVHGDSESG 180 FGFKSVANKN LVSVAFGPKD YVGVNGKLTA NVGLNCDNGG EFGYKVEKTR GGRKVMPQGV 240 RLPDYEMIAN NYGSYVRDFT KGVHSYGGFP LKSLGDGNYN TIDGKPTPDF CDNDDHVEID 300 YRNDKRDEFG KKVTNGWSYS PTGFRPKNCG TIDGNSRSNA RSRAVNGSVN VGMNGIGDGV 360 KRETDPISLL VSAIEQATES FVKVEMMKMD MASEIEKMRM EMGLKHNQMI LESQQRIVDT 420 LAKAMLEKKK EREKVEVRPP NSSRNGFSQV AAVEFERIGK SIVKEGEACF T*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

METTPCATPK RVPPPCWTRD ESLALIKAYC DKWYSVNRGN LRAADWEAVA VAVPPKSSLQ  60
CRHKIEKLRK RYRVEKQKCL EYPGQFFSSW DLFPLLDSLE IGSLGSKGDQ EIDKGNDVGD  120
GFRVKTLGDR YLLTTQKNGK TNGDLDPDED FGLDPDLAFR AAKYSKVHGG FNVHGDSESG  180
FGFKSVANKN LVSVAFGPKD YVGVNGKLTA NVGLNCDNGG EFGYKVEKTR GGRKVMPQGV  240
RLPDYEMIAN NYGSYVRDFT KGVHSYGGFP LKSLGDGNYN TIDGKPTPDF CDNDDHVEID  300
YRNDKRDEFG KKVTNGWSYS PTGFRPKNCG TIDGNSRSNA RSRAVNGSVN VGMNGIGDGV  360
KRETDPISLL VSAIEQATES FVKVEMMKMD MASEIEKMRM EMGLKHNQMI LESQQRIVDT  420
LAKAMLEKKK EREKVEVRPP NSSRNGFSQV AAVEFERIGK SIVKEGEACF T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G150600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006368939.1	0.0	uncharacterized protein LOC18094549
TrEMBL	U5GPJ6	0.0	U5GPJ6_POPTR; Uncharacterized protein
STRING	POPTR_0001s15070.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Potri.001G150600.1
Entrez Gene	18094549