PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G147000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 315aa    MW: 35210.3 Da    PI: 9.8197
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G147000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-07256297443
                         S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                         WTt Ed  l++a k + ++   +W++Ia+ ++ g++   c  r
  Potri.001G147000.1 256 WTTGEDIALLNALKVFSKDvamRWEKIAAAVP-GKSKAACMKR 297
                         ********************************.*******887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.937155196IPR017877Myb-like domain
SMARTSM007170.11159212IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-5161199IPR009057Homeodomain-like
SMARTSM007170.0011252304IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-9255301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-5256305IPR009057Homeodomain-like
CDDcd001675.80E-5256302No hitNo description
PROSITE profilePS500906.69256302IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEFLDEDARP RFLFQSRPIP SSLTNTQTQQ KPLNKWFLFL SISLSSLLLL LSFLYLQTEP  60
IRSLLFWVSI SLLVGPFAPS HLTGGDIRVG QGPILEPLEQ EPEFVEEKQA RKKRSKPIRS  120
EEIVKNPIQN VEITNGLSTK GKKAETLASG EKGLVRNEGE KEWNEEDSEI LKKQMVKNPV  180
GKPRRWEVIA EAFNGRYRVE SVIKKAKELG EKKMDDSDSY ARFLKNRKPL DTRAESGSQG  240
LESDESGQEV GGGLGWTTGE DIALLNALKV FSKDVAMRWE KIAAAVPGKS KAACMKRVTE  300
LKKDFRSSKA GSES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G147000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7072210.0JN707221.1 Populus trichocarpa isolate CVA02 locus 676503 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440552.10.0transcription factor MAMYB
SwissprotQ9ASQ22e-82MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2K2BXQ50.0A0A2K2BXQ5_POPTR; Uncharacterized protein
STRINGXP_002528771.11e-161(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-78MYB_related family protein