PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G144400.1
Common NamePOPTR_0001s02710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 372aa    MW: 41773.4 Da    PI: 5.4192
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G144400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-5361331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yL++k++g ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratksgyWkatgkd
  Potri.001G144400.1   6 LPPGFRFHPTDEELVGYYLQRKAQGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKSGYWKATGKD 95 
                         79****************************.99**************95344555788********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v++ k++++g +ktLvfy+grap g +tdWvmheyrl
  Potri.001G144400.1  96 RKVVC-KSAVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                         *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-624156IPR003441NAC domain
PROSITE profilePS5100557.5146156IPR003441NAC domain
PfamPF023651.7E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLQRKAQG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATKSGYWK ATGKDRKVVC KSAVTGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDISQG SPNLKGAFAL CHVVKKNEQG LKISDSQGEP KAKQVGSSSS  180
NVDFTSAVIS NEPSNISFDM SSQASYLYNN ESRYSSPITS PYQVAPMSDF EPAASMESYP  240
SSHWISPDLI LDSSKDYSQV HETAAQYLPQ YEYPISMNTW QPDRHREFSP GSSHSNFTGE  300
IEPPDDLSHI GFMSPYSGHG NYLGFGGNDD MHYQGFEPRN QAPICKQASG DGSLGEYGGL  360
WSQEDNMVIV I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-52516216171NO APICAL MERISTEM PROTEIN
1ut4_B2e-52516216171NO APICAL MERISTEM PROTEIN
1ut7_A2e-52516216171NO APICAL MERISTEM PROTEIN
1ut7_B2e-52516216171NO APICAL MERISTEM PROTEIN
4dul_A2e-52516216171NAC domain-containing protein 19
4dul_B2e-52516216171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.27830.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G144400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2241051e-168CU224105.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368425.10.0NAC domain-containing protein 71
RefseqXP_024452060.10.0NAC domain-containing protein 71
SwissprotO496971e-107NAC71_ARATH; NAC domain-containing protein 71
TrEMBLU5GS830.0U5GS83_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-110NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]