PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G143900.1
Common NamePOPTR_0001s02650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LSD
Protein Properties Length: 157aa    MW: 16144.9 Da    PI: 8.2025
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G143900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.11.4e-133963125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL YP GA+sV+Ca+C++V
  Potri.001G143900.1 39 CSGCRNLLLYPVGATSVCCAVCNAV 63
                        ************************9 PP
2zf-LSD146.65.4e-1578102125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         CggC+tlL+Y rGA+sV+C++C+tV
  Potri.001G143900.1  78 CGGCHTLLMYIRGATSVQCSCCHTV 102
                         ************************9 PP
3zf-LSD140.35.2e-13116140125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  Potri.001G143900.1 116 CGSCRMLLMYRYGARSVKCAVCNFV 140
                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-123666IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-103963IPR005735Zinc finger, LSD1-type
SuperFamilySSF486959.07E-539137IPR011031Multihaem cytochrome
TIGRFAMsTIGR010539.8E-1575104IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1278102IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.7E-13113141IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-12116140IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYAPPAP APAPPPPPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC  60
NAVTAVPPPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGSCR  120
MLLMYRYGAR SVKCAVCNFV TPVGVSSSVN ERKFNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.102041e-164bud
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G143900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2322471e-139CU232247.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368419.11e-106protein LOL1
RefseqXP_024465839.11e-106protein LOL1
RefseqXP_024465846.11e-106protein LOL1
SwissprotQ93ZB11e-78LOL1_ARATH; Protein LOL1
TrEMBLU5GN461e-105U5GN46_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02650.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-64lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]