PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G125900.1 | ||||||||
Common Name | POPTR_0001s00800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27879.7 Da PI: 9.5411 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 7 | 27 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+++F + + H+r+H Potri.001G125900.1 7 CKICNRRFANGKAMGGHMRSH 27 *******************99 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0016 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k F++ L H +H Potri.001G125900.1 140 FKCETCKKGFRSYQALGGHRASH 162 89**********99999998887 PP | |||||||
3 | zf-C2H2 | 11.6 | 0.00089 | 191 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C k+F + L H ++H Potri.001G125900.1 191 FKCPFCEKVFDSGQALGGHKKVH 213 89**********99999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.92E-5 | 2 | 32 | No hit | No description |
PROSITE profile | PS50157 | 9.785 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-8 | 5 | 29 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 140 | 162 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.71E-8 | 140 | 213 | No hit | No description |
Pfam | PF13912 | 1.8E-10 | 140 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.034 | 140 | 167 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 142 | 162 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.949 | 191 | 218 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 191 | 213 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.9E-8 | 191 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 213 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEKTRICKIC NRRFANGKAM GGHMRSHLAK LPLPPKPIPP QETYNTLKKS PPETESTREP 60 TRRRSKRSRK SADEVAESMV KVTESSEQVS SISYLLAEED VALCLLMLSR DNWSEDAKQV 120 KKEDYLFGFT RAKYKSQGKF KCETCKKGFR SYQALGGHRA SHKKIKIHEE HEEGNGSGCG 180 EDNRSVGKRI FKCPFCEKVF DSGQALGGHK KVHFSYLPVT NAKISINFLD LNVPALEGTH 240 DDGEVSEA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G125900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453144.1 | 1e-149 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A3N7FSN9 | 1e-148 | A0A3N7FSN9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s00800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 4e-28 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G125900.1 |
Entrez Gene | 18094020 |