PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G113600.1

Common Name

POPTR_0001s08350g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 303aa MW: 34336.3 Da PI: 5.2491

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G113600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.6	2.1e-15	27	118	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a ++ +l+rg+l++++W++v++ + + ++ +r+ +qCk++++ ++k+yk +k + + + + +s++p+f++l+ Potri.001G113600.1 27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADTVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKSRVVSSNGTLTSSWPFFERLD 117 7**************************************99999*********************999998888899****98 PP trihelix 87 a 87 a Potri.001G113600.1 118 A 118 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.5E-26	25	119	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEDLIESSSV TPSTAPHSRS LPIREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQDV 60 ADTVNALHGH TKKTHRTDVQ CKNRIDTIKK KYKIEKSRVV SSNGTLTSSW PFFERLDALI 120 GSNFNSSIKK PPSPSLSPSP PVALPLHPSY RRTPPVSSTP PPQPAALAVA LPQKRTLPVD 180 DGGYFRRNYS AMAAAAAAQE SDSEEEEEEE EEEEFEAGER ESVEEDGEGE GIKRLARAVE 240 RFGEVYERVE SEKLKQMVDL EKQRMKFAKD LEMERMRIFT ETQIQLEKIK KGKRAPDNER 300 DY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G113600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299577.2	0.0	trihelix transcription factor ASIL2 isoform X2
TrEMBL	B9GKS1	0.0	B9GKS1_POPTR; Uncharacterized protein
STRING	POPTR_0001s08350.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	6e-40	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Potri.001G113600.1
Entrez Gene	7490932