PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G111800.1
Common NamePOPTR_0001s08590g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 398aa    MW: 41592.8 Da    PI: 6.1628
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G111800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.61.3e-351042052101
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                         ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++   ++ +  + +s+++++ 
  Potri.001G111800.1 104 TTRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVsVGGTLKIPTTTSNNSNSL 194
                         7899************************************************************888885553222222222222222222 PP

                 TCP  92 ksaa.kskksq 101
                         ++++ k+k+++
  Potri.001G111800.1 195 TETPkKRKRPS 205
                         22221222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-29109186IPR005333Transcription factor, TCP
PROSITE profilePS5136926.274110164IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MASFQEHGMD PDDEGGTSDL STSAGDPEDN RNSSSISSNG CLKISTIDET EAFQVMPLKE  60
EPFDSDPSSD PDQRTNPMGV VPLAMQMQTP MPISMPLPVT TTATTRRAST KDRHTKVEGR  120
GRRIRIPATC AARIFQLTRE LGHKSDGETV RWLLEHAEEA IIEATGTGTV PAIAVSVGGT  180
LKIPTTTSNN SNSLTETPKK RKRPSNSEFC DISEAAPVST SQTSGLAPVK PSAPLAAAAT  240
PQGMVPVFAV GNTGMMVPAN AFWMIPQAAA TVAPANQQIW ALSPSLTPVF NVAAARPISS  300
FVASTNSGNE TGVSIAAAAA SVVNIPSEVE FRSPSPVVAS TSVGAKVAKK STMAPSVSSN  360
SGSGKGGKAQ MLRDFSLEIY DKQELQLMGR PGNNQPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203PKKRKRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G111800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0036882e-87HM003688.1 Passiflora morifolia TCP1 (TCP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298077.10.0transcription factor TCP9
SwissprotO646478e-66TCP9_ARATH; Transcription factor TCP9
TrEMBLB9GKQ50.0B9GKQ5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.17e-50TCP family protein