PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G111800.1 | ||||||||
Common Name | POPTR_0001s08590g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 398aa MW: 41592.8 Da PI: 6.1628 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.6 | 1.3e-35 | 104 | 205 | 2 | 101 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ ++ + + +s+++++ Potri.001G111800.1 104 TTRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVsVGGTLKIPTTTSNNSNSL 194 7899************************************************************888885553222222222222222222 PP TCP 92 ksaa.kskksq 101 ++++ k+k+++ Potri.001G111800.1 195 TETPkKRKRPS 205 22221222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.2E-29 | 109 | 186 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.274 | 110 | 164 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MASFQEHGMD PDDEGGTSDL STSAGDPEDN RNSSSISSNG CLKISTIDET EAFQVMPLKE 60 EPFDSDPSSD PDQRTNPMGV VPLAMQMQTP MPISMPLPVT TTATTRRAST KDRHTKVEGR 120 GRRIRIPATC AARIFQLTRE LGHKSDGETV RWLLEHAEEA IIEATGTGTV PAIAVSVGGT 180 LKIPTTTSNN SNSLTETPKK RKRPSNSEFC DISEAAPVST SQTSGLAPVK PSAPLAAAAT 240 PQGMVPVFAV GNTGMMVPAN AFWMIPQAAA TVAPANQQIW ALSPSLTPVF NVAAARPISS 300 FVASTNSGNE TGVSIAAAAA SVVNIPSEVE FRSPSPVVAS TSVGAKVAKK STMAPSVSSN 360 SGSGKGGKAQ MLRDFSLEIY DKQELQLMGR PGNNQPR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 203 | PKKRKRP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G111800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM003688 | 2e-87 | HM003688.1 Passiflora morifolia TCP1 (TCP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298077.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 8e-66 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | B9GKQ5 | 0.0 | B9GKQ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s08590.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 | Representative plant | OGRP3178 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 7e-50 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G111800.1 |
Entrez Gene | 7478084 |