PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G110700.1
Common NamePOPTR_0001s08720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 232aa    MW: 25723.6 Da    PI: 5.4586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G110700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-1562111255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr +    +Wv+e+r+p   +k+ r++lg++ t+e+Aa+a++ a+++++g
  Potri.001G110700.1  62 IFRGVRKRN-GDKWVCELREP---NKKSRIWLGTYPTPEMAARAHDVAALAFRG 111
                         59****887.8*********8...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-1161111IPR001471AP2/ERF domain
CDDcd000188.00E-2761121No hitNo description
SMARTSM003806.2E-2862125IPR001471AP2/ERF domain
PROSITE profilePS5103221.4762119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-2962121IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2062121IPR016177DNA-binding domain
PRINTSPR003676.4E-76374IPR001471AP2/ERF domain
PRINTSPR003676.4E-785101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVMGGSNSFS PDKQESSLSS LLSDSSGSQQ DSPSSNEKVL LATSRPKKRA GRRIFKETRH  60
PIFRGVRKRN GDKWVCELRE PNKKSRIWLG TYPTPEMAAR AHDVAALAFR GKSACLNFAD  120
SAWRLPVPIS NEAKDIRRAA SEAAELFRTS DLGGQVMEDF RREDRGEVRS STNDDIRDLP  180
SENVGYIDEE AEFNMPGLLA SMAEGLLLSP PHYTGDWNDG EIDADWSLWS S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.38920.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G110700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514580.0EF151458.1 Populus trichocarpa C-repeat binding facor 3 (CBF3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298067.21e-170dehydration-responsive element-binding protein 1E
SwissprotQ9FJ934e-65DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLB9GKP31e-168B9GKP3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08720.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-66C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]