PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G110500.1 | ||||||||
Common Name | POPTR_0001s08740g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 18936.2 Da PI: 5.232 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46 | 1.3e-14 | 14 | 61 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ g+Wv+eIr+p++ ++r++lg+f +e+Aa+a++ a+++l+g Potri.001G110500.1 14 YHGIR-CR-GGKWVSEIREPRK---TTRIWLGTFPKPEMAAAAYDVAALALKG 61 89998.55.7*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.452 | 13 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-17 | 13 | 71 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-25 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-24 | 13 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-8 | 14 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.97E-13 | 14 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MATTSSNSKR HPMYHGIRCR GGKWVSEIRE PRKTTRIWLG TFPKPEMAAA AYDVAALALK 60 GNGAVLNFPS SVGTYPVPAT ASSTDIRNAA AAAAALKKAE LSYNEALVDQ PRNDHNAIGA 120 YLASSGEEFV DEEALFDMPN LLVDMAGGML LSPPRITSPP SDDSQGNSDG ESLWSYF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G110500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298066.1 | 1e-129 | ethylene-responsive transcription factor ERF026 | ||||
Swissprot | Q9CAN9 | 5e-50 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | B9GKP1 | 1e-128 | B9GKP1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s08740.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 8e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G110500.1 |
Entrez Gene | 7490917 |