PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G099000.1 | ||||||||
Common Name | POPTR_0001s09900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 168aa MW: 18826.2 Da PI: 6.1171 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.2e-30 | 2 | 57 | 5 | 59 |
S-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 5 ynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++WrKYGqK++kgs++prsYYrC+s gC ++k+vers++dp++++itY+ eH h Potri.001G099000.1 2 WAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSSTDPSIFIITYTAEHSHA 57 89**********************998****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 30.641 | 1 | 59 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-25 | 2 | 56 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-32 | 2 | 58 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-25 | 2 | 59 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-29 | 2 | 59 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MWAWRKYGQK PIKGSPYPRS YYRCSSLKGC LARKQVERSS TDPSIFIITY TAEHSHAHPT 60 RRSSLAGSTR IKRDAIKGTT PNIEPNMPTI KDQRSPNFDG LISPTTPSMT STEDELVQNL 120 SIKNEELLDQ GQILEGNESK EISVPDLVFS DDLFPTLEDL EGFLLDH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-18 | 1 | 60 | 19 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-18 | 1 | 60 | 19 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G099000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368768.1 | 1e-121 | probable WRKY transcription factor 29 | ||||
Swissprot | Q9FLX8 | 1e-38 | WRK27_ARATH; Probable WRKY transcription factor 27 | ||||
TrEMBL | A0A3N7FWR6 | 1e-120 | A0A3N7FWR6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s09900.1 | 1e-121 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 1e-29 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G099000.1 |
Entrez Gene | 18094445 |
Publications ? help Back to Top | |||
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