PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G094800.1
Common NamePOPTR_0001s10300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 348aa    MW: 38312.3 Da    PI: 5.1577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G094800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19128178155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Potri.001G094800.1 128 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 178
                         59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-32128185No hitNo description
Gene3DG3DSA:3.30.730.101.1E-29129186IPR001471AP2/ERF domain
PROSITE profilePS5103223.341129186IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-21129186IPR016177DNA-binding domain
PfamPF008472.2E-12129178IPR001471AP2/ERF domain
SMARTSM003802.5E-36129192IPR001471AP2/ERF domain
PRINTSPR003673.8E-10130141IPR001471AP2/ERF domain
PRINTSPR003673.8E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDHPVKFSEH RNQTKLTTSF LSNPVQHSKP PKIVRISVTD TYATDSSSDE ENEVAAGSSH  60
KRHVTRVKKF VNEISIEPPS SSRSADCVPV DTVLGTKPSR SARKKVGDNG SRTRRFPSKA  120
TATVVVGKKF RGVRQRPWGK WAAEIRDPLR RVRLWLGTYD TAEEAAMVYD NAAIQLRGPD  180
ALTNFVTPPA RCSPLAATSG YISGDESNSN YNINNDGVVN VSSPISVLRF SEEAETQSAS  240
SSREIRDTGT EVPEVKEDSC VSENLSDFSE YNSSIDSLFP PTTDICELRS SMRNIFEETS  300
FAAGGFLKDD DFRDMDLDFG FGLSSWNVQD HFQDIGDLFG SDSLIAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20127200369ATERF1
3gcc_A1e-20127200369ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G094800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299493.10.0ethylene-responsive transcription factor CRF1
TrEMBLB9GL910.0B9GL91_POPTR; Uncharacterized protein
STRINGPOPTR_0001s10300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-53cytokinin response factor 2