PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G092900.1 | ||||||||
Common Name | POPTR_0001s10490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 339aa MW: 37966.7 Da PI: 6.1045 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.7 | 1.1e-28 | 131 | 191 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g+++prsYYrC+++ +C+++k+v+rs+edp+v+eitY+g+H + Potri.001G092900.1 131 DDGFSWRKYGQKDILGAKYPRSYYRCSYRntqNCWATKQVQRSDEDPTVFEITYRGTHSCA 191 8**************************998899*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.781 | 125 | 189 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.2E-27 | 126 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-25 | 129 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-39 | 130 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 131 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MENGWSWEQK TLITELIQGM ELAKQLRAHL NATSSVETRD MLVRRILSSY EKALLILNGG 60 GSMGQPQNAG VSAGVPESPR SINGSSRSDD FDGSVKDNQG YNEASKKRKT TPRWTDQVRV 120 STDNGLEGHH DDGFSWRKYG QKDILGAKYP RSYYRCSYRN TQNCWATKQV QRSDEDPTVF 180 EITYRGTHSC AHGNQSVPSP EKQEKKRKNT NNNCQQQQSQ QALFNFHNSL RVNTEDFDNK 240 EMVSPFSFPS TNGCTKSEGS FSPFISPATP EPTHYSLSPF QMNNFVGVQN LQHLESDFTD 300 IISANTSATN SPIVDLDFSL DQVELVPDFP FDSPGFFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-18 | 132 | 188 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 5e-18 | 132 | 188 | 18 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G092900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377432 | 0.0 | GQ377432.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002297983.2 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A2K2BUY3 | 0.0 | A0A2K2BUY3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s10490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 4e-78 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G092900.1 |
Entrez Gene | 7472714 |