PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G092900.1
Common NamePOPTR_0001s10490g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 339aa    MW: 37966.7 Da    PI: 6.1045
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G092900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.1e-28131191259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqK++ g+++prsYYrC+++   +C+++k+v+rs+edp+v+eitY+g+H + 
  Potri.001G092900.1 131 DDGFSWRKYGQKDILGAKYPRSYYRCSYRntqNCWATKQVQRSDEDPTVFEITYRGTHSCA 191
                         8**************************998899*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.781125189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-27126191IPR003657WRKY domain
SuperFamilySSF1182906.93E-25129191IPR003657WRKY domain
SMARTSM007742.8E-39130192IPR003657WRKY domain
PfamPF031061.2E-26131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MENGWSWEQK TLITELIQGM ELAKQLRAHL NATSSVETRD MLVRRILSSY EKALLILNGG  60
GSMGQPQNAG VSAGVPESPR SINGSSRSDD FDGSVKDNQG YNEASKKRKT TPRWTDQVRV  120
STDNGLEGHH DDGFSWRKYG QKDILGAKYP RSYYRCSYRN TQNCWATKQV QRSDEDPTVF  180
EITYRGTHSC AHGNQSVPSP EKQEKKRKNT NNNCQQQQSQ QALFNFHNSL RVNTEDFDNK  240
EMVSPFSFPS TNGCTKSEGS FSPFISPATP EPTHYSLSPF QMNNFVGVQN LQHLESDFTD  300
IISANTSATN SPIVDLDFSL DQVELVPDFP FDSPGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-181321881874Disease resistance protein RRS1
5w3x_D5e-181321881874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G092900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774320.0GQ377432.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297983.20.0probable WRKY transcription factor 41
TrEMBLA0A2K2BUY30.0A0A2K2BUY3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s10490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-78WRKY family protein