PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G092400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 316aa    MW: 34965.3 Da    PI: 8.6326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G092400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-19107157256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Potri.001G092400.1 107 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 157
                         59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.45E-17106166No hitNo description
SuperFamilySSF541711.57E-22107164IPR016177DNA-binding domain
SMARTSM003801.0E-35107170IPR001471AP2/ERF domain
PROSITE profilePS5103223.301107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-31107165IPR001471AP2/ERF domain
PRINTSPR003673.9E-10108119IPR001471AP2/ERF domain
PfamPF008473.1E-13108157IPR001471AP2/ERF domain
PRINTSPR003673.9E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MERMQENNFS FAFNNTTDIG SSLSQLILAG GTNTLDSIFS YCQAASTLTS PAFEPLGSSV  60
YLRQRDLLQK FSEENRTNTS FSHNWLTNPL QNPGHTSNYL APIKKKLYRG VRQRHWGKWV  120
AEIRLPQNRM RVWLGTYDTA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPT ELGFKDCTRL  180
DVLKSTVDAK IQAICQKVKK ERAKKNAGKK SNVNGKSTES QKPVKVDSNS STPSPSSSSS  240
SSPPPPPLLS GNNWGCSELV SPAVSEEALW KCESSSPSVS TDCPVMVPQD SEFEGCSLAR  300
MPSYDPELIW EVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20106164160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20104164263ATERF1
3gcc_A3e-20104164263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120250.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G092400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464199.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W24e-68ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2K2BUX40.0A0A2K2BUX4_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13910.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.19e-56ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]