PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G088600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 707aa    MW: 78422.5 Da    PI: 6.9521
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G088600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-24135235198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +
  Potri.001G088600.1 135 FCKVLTASDTSTHGGFSVLRKHATEClppldMTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--R 223
                         99****************************9666677789************************************************..4 PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                          +++el+v+v+r
  Potri.001G088600.1 224 GENGELRVGVRR 235
                         49999*****98 PP
2Auxin_resp103.33e-34261340183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha+st + F v+Y+Pr+  s+F+++++k+++a+++k+ vGmRfkm+fe+eds+ rr+sGt+vgv+d++p +W++SkWrsLk
  Potri.001G088600.1 261 ASHAVSTLTLFVVYYKPRT--SQFIISLNKYLEAVSNKFVVGMRFKMRFEGEDSPDRRFSGTIVGVEDFSP-HWNDSKWRSLK 340
                         689***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-40125264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41126250IPR015300DNA-binding pseudobarrel domain
CDDcd100177.43E-21133235No hitNo description
PROSITE profilePS5086312.308135237IPR003340B3 DNA binding domain
PfamPF023622.0E-22135235IPR003340B3 DNA binding domain
SMARTSM010195.6E-24135237IPR003340B3 DNA binding domain
PfamPF065071.8E-31261340IPR010525Auxin response factor
PfamPF023098.8E-13569676IPR033389AUX/IAA domain
SuperFamilySSF542775.4E-14581664No hitNo description
PROSITE profilePS5174527.193588669IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MMAMNRGIGG GGGGGSLSQG NSEGCGGDDL YTELWKACAG PLVDVPKRGE RVFYFPQGHM  60
EQLEASTNQE LNQRVPLFNL PSKILCRVIH TQLLAEQDTD EVYAQITLIP ESDQIEPTSP  120
DSSSSEPPRP TVHSFCKVLT ASDTSTHGGF SVLRKHATEC LPPLDMTQPT PTQELVAKDL  180
HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDSFV FLRGENGELR VGVRRVACQQ  240
SSMPSSVISS QSMHLGVLAT ASHAVSTLTL FVVYYKPRTS QFIISLNKYL EAVSNKFVVG  300
MRFKMRFEGE DSPDRRFSGT IVGVEDFSPH WNDSKWRSLK VQWDEPAPIP RPDRVSPWEI  360
EPCVASVPTN LSQPVTQKNK RPRPPFEIPA LDLSSTASTR NSGLTQSHDL TQLSVTGEGK  420
SYENHVMWHQ KQTDVNGHSN SMSRTQTEGG WLASPHVNVS QHPFQDAMED SKSVSPWPVF  480
SGYSTPLSSK SKNDAILDPS DKGRKSEVPT SYRLFGIDLV NHSSSSTPIE VPAQLMSICS  540
GATEGHVLGA LSAVDSDQKS EVSKEQKPEQ LQKSPKEIQS KQSSTSTRSR TKVQMQGIAV  600
GRAVDLTMLK GYSQLIDELE QLFDIKGQLH PRDKWEIVYT DDEGDMMLVG DDPWPEFCNM  660
VRRIYICSSQ DVKRMGPGSK LPMLPIKVVF GLRGWFKLER QEALAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-177183627354Auxin response factor 1
4ldw_A1e-177183627354Auxin response factor 1
4ldw_B1e-177183627354Auxin response factor 1
4ldx_A1e-177183627354Auxin response factor 1
4ldx_B1e-177183627354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379383KRPRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G088600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445226.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2K2BUP00.0A0A2K2BUP0_POPTR; Auxin response factor
STRINGXP_002518850.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9