PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G083700.1 | ||||||||
Common Name | POPTR_0001s11380g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 197aa MW: 23014.5 Da PI: 9.4442 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5e-20 | 17 | 69 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le +Fe+++ p + +++LA++lgL+ rqV +WFqNrRa+ k Potri.001G083700.1 17 KRRFTDEQIKFLEFMFESESRPESRVKQQLASELGLEPRQVAIWFQNRRARLK 69 468************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.7 | 2.4e-36 | 17 | 107 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 krr+++eq+k+LE +Fe+e++ e++ K++la+eLgl+prqva+WFqnrRAR ktkq+Ek+y+ Lk++yd l+++ e+L++e+++L +l++ Potri.001G083700.1 17 KRRFTDEQIKFLEFMFESESRPESRVKQQLASELGLEPRQVAIWFQNRRARLKTKQIEKEYSILKASYDVLASSFESLKREKQSLIIQLHK 107 9************************************************************************************988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.0E-18 | 8 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.459 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 13 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-17 | 17 | 69 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.44E-13 | 17 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-19 | 18 | 78 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.6E-16 | 71 | 111 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDPGTHPLSS IQKNAYKRRF TDEQIKFLEF MFESESRPES RVKQQLASEL GLEPRQVAIW 60 FQNRRARLKT KQIEKEYSIL KASYDVLASS FESLKREKQS LIIQLHKLKN RHVKQHGSRN 120 CGNQLRSSRD GRFENKDTGS ESKEKPSSPL DGNENEENRP SSDNNGRNTV NMREEIDILN 180 HTEQTDNSSQ WWEFWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 71 | RRARLKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G083700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232815 | 0.0 | CU232815.1 Populus EST from severe drought-stressed opposite wood. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002297947.1 | 1e-143 | homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 9e-37 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | B9GK74 | 1e-142 | B9GK74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11380.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16057 | 9 | 10 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-39 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G083700.1 |
Entrez Gene | 7467039 |
Publications ? help Back to Top | |||
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