PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G080900.1

Common Name

POPTR_0001s11660g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 248aa MW: 28843.8 Da PI: 7.7564

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G080900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.7	3.4e-51	20	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l pGfrFhPtdeelv +yLkkkve+k++++ + ik+vd+yk+ePwdLpk +++a+e+ewyfF++r +ky+++ r+nr+t+sg+Wkatg d Potri.001G080900.1 20 LLPGFRFHPTDEELVGFYLKKKVEKKPIRI-DLIKHVDVYKYEPWDLPKeaSCSAGEREWYFFCRRGRKYKNSIRPNRVTRSGFWKATGID 109 579*************************.99**********95346667999***************************** PP NAM 90 kevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 k+++s ++ + +glkk+Lv+y+g+a kg+ktdW+mhe+rl Potri.001G080900.1 110 KPIYSVGKIHycIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 150 *7555577*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-53	20	180	IPR003441	NAC domain
PROSITE profile	PS51005	53.157	20	181	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	22	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MELDRLSASS KDVEEDDDIL LPGFRFHPTD EELVGFYLKK KVEKKPIRID LIKHVDVYKY 60 EPWDLPKEAS CSAGEREWYF FCRRGRKYKN SIRPNRVTRS GFWKATGIDK PIYSVGKIHY 120 CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PACENTASLT NPDGCDIHEA EVWTLCRIFQ 180 REAPFNKKYL SSKQQSQMSL TSQVPFTTSY LSFLNQNGDQ LFGDENWDEL RPMVEFALDP 240 SEIYCIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-45	20	187	15	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G080900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU276019	1e-112	GU276019.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBank	GU276020	1e-112	GU276020.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBank	GU276021	1e-112	GU276021.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBank	GU276022	1e-112	GU276022.1 Populus balsamifera isolate POR11 haplotype A unknown gene, partial sequence.
GenBank	GU276023	1e-112	GU276023.1 Populus balsamifera isolate POR11 haplotype B unknown gene, partial sequence.
GenBank	GU276024	1e-112	GU276024.1 Populus balsamifera isolate RNA13 haplotype A unknown gene, partial sequence.
GenBank	GU276025	1e-112	GU276025.1 Populus balsamifera isolate RNA13 haplotype B unknown gene, partial sequence.
GenBank	GU276026	1e-112	GU276026.1 Populus balsamifera isolate STL13 haplotype A unknown gene, partial sequence.
GenBank	GU276027	1e-112	GU276027.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
GenBank	JN706905	1e-112	JN706905.1 Populus fremontii isolate FCC01 locus 424060 genomic sequence.
GenBank	JN706908	1e-112	JN706908.1 Populus trichocarpa isolate CVA01 locus 424060 genomic sequence.
GenBank	JN706909	1e-112	JN706909.1 Populus trichocarpa isolate CJU02 locus 424060 genomic sequence.
GenBank	JN706910	1e-112	JN706910.1 Populus trichocarpa isolate CKR02 locus 424060 genomic sequence.
GenBank	JN706911	1e-112	JN706911.1 Populus trichocarpa isolate CSC01 locus 424060 genomic sequence.
GenBank	JN706913	1e-112	JN706913.1 Populus trichocarpa isolate CKR01 locus 424060 genomic sequence.
GenBank	JN706914	1e-112	JN706914.1 Populus trichocarpa isolate CKR03 locus 424060 genomic sequence.
GenBank	JN706915	1e-112	JN706915.1 Populus trichocarpa isolate CKR04 locus 424060 genomic sequence.
GenBank	JN706916	1e-112	JN706916.1 Populus trichocarpa isolate CWY14 locus 424060 genomic sequence.
GenBank	JN706917	1e-112	JN706917.1 Populus trichocarpa isolate CJU04 locus 424060 genomic sequence.
GenBank	JN706918	1e-112	JN706918.1 Populus trichocarpa isolate CVA02 locus 424060 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024466158.1	1e-178	transcription factor JUNGBRUNNEN 1 isoform X1
Swissprot	Q9SK55	2e-80	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A3N7E876	1e-177	A0A3N7E876_POPTR; Uncharacterized protein
STRING	POPTR_0001s11660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-82	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Potri.001G080900.1
Entrez Gene	7477803

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]