PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G079800.1 | ||||||||
Common Name | POPTR_0001s11780g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 31845.7 Da PI: 8.6269 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 129 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka++ a+ +l+g Potri.001G079800.1 129 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDSAAFRLRG 179 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 128 | 188 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.55E-32 | 129 | 187 | No hit | No description |
PROSITE profile | PS51032 | 24.645 | 129 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 129 | 188 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-14 | 129 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-37 | 129 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-13 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-13 | 169 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MASFDHEAST LELIRQHLLT DFASMDSFIS NLDDLCSTST TSTTDDYYIK SESTEFDPFD 60 QPQFKLQTQS SIESKPQYSS PKSSTSLSQR KPSMIKDIAI PPPATLNMNP QVAQPVVNKT 120 DLSSEQDRHY RGVRRRPWGK YAAEIRDPNK KGARVWLGTF DTAIEAAKAY DSAAFRLRGS 180 KAILNFPLEA GKSNSQQPEQ FLETSCKKRK FEGIKSSVEG TNSITNKVVK RETSSPESEV 240 KAVASGPLTP SSWKGFWDGE TMGIFSVPPL SPLSPHPSFG YSRLMVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-30 | 128 | 188 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15836 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G079800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216594 | 0.0 | AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299408.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | B9GK34 | 0.0 | B9GK34_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 6e-60 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G079800.1 |
Entrez Gene | 7491489 |