PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G075400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 358aa    MW: 40336.4 Da    PI: 6.9721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G075400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-182673148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Potri.001G075400.1 26 RGLWSPEEDEKLIKYITIHGHGSWSSVPNLAGLERCGKSCRLRWINYL 73
                        788*******************************************97 PP
2Myb_DNA-binding45.41.8e-1479122146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+ E+ ++vd ++ lG++ W+ Ia++++ gRt++++k++w++
  Potri.001G075400.1  79 RGSITAKEERIIVDTHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 122
                         7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-261776IPR009057Homeodomain-like
PROSITE profilePS5129424.8622177IPR017930Myb domain
SuperFamilySSF466891.05E-2823120IPR009057Homeodomain-like
SMARTSM007171.9E-132575IPR001005SANT/Myb domain
PfamPF002499.8E-162673IPR001005SANT/Myb domain
CDDcd001674.28E-112973No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2377129IPR009057Homeodomain-like
PROSITE profilePS5129419.77878128IPR017930Myb domain
SMARTSM007179.5E-1378126IPR001005SANT/Myb domain
PfamPF002493.2E-1279122IPR001005SANT/Myb domain
CDDcd001672.70E-983121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVSCDIQEGL GNKMGHQCCR KQKVKRGLWS PEEDEKLIKY ITIHGHGSWS SVPNLAGLER  60
CGKSCRLRWI NYLRPDLKRG SITAKEERII VDTHRILGNK WAQIAKHLPG RTDNEVKNFW  120
NSCIKKKLIA QGLDPNTHNL LSTNYKHNNN NDAWKLSYHS HQQPTSTFTV NSQISDISSM  180
VMKAPPIPFP MIPLAPDTNP PLSHEFSSIL TYEYQNPRTQ AFLESTASQS SIGSVPIFSS  240
TSHPSEFGML DESCMWAGGY DPTQSIIPEK KQPEQQVGIE KITSHELTSA GQNMDASFET  300
SNFDFDFDFV ESTLLPCGMY YNQSPIDQLA WDSWALQEKK NDCCGNDTNI SPHRNKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29261287108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G075400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299386.30.0transcription factor MYB86
TrEMBLA0A2K2BTZ30.0A0A2K2BTZ3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s12240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-81myb domain protein 67