PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G069900.1 | ||||||||
Common Name | POPTR_0001s12770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 43228.6 Da PI: 8.3838 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.5e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H Potri.001G069900.1 6 YICEVCHKGFQRDQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00022 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Potri.001G069900.1 82 WKCDKCSKRYAVQSDWKAHTKIC 104 58*****************9987 PP | |||||||
3 | zf-C2H2 | 11.3 | 0.001 | 112 | 130 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + Potri.001G069900.1 112 DCGTIFSRKDSFVTHRAFC 130 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.5E-6 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.038 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 70 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.5E-6 | 77 | 102 | No hit | No description |
SMART | SM00355 | 130 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRQNT QAKKRVYVCP EPTCVHHDPS 60 RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH TKICGTREYR CDCGTIFSRK 120 DSFVTHRAFC DALAEENCKV NQNLAATGGM LQAQEPFSSS MPSSDACTNK SAAMNLTISA 180 ENSDSALRPL SLNSSGMVMS SNLNPRTSLP LACFSSLDGS NTSPSAIGSS YTSATALLQK 240 AAVMGAKISD NSIAPILFKG FNGYSTTSMN SSGLVPEGSS IDGSNIGPHA ANMNGIYLGD 300 TEMFDKNLDP GYPRNSVCQT GFFESPLLMD IENGNAAHAL AGEAYMGGSE KMTVDFLGVE 360 PPTGHSAVGR KRNYEGNIMG LGYSNAQQNL HNLHSDW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-33 | 78 | 136 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 7e-33 | 78 | 136 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G069900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024448903.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 2e-96 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2K1R5L6 | 0.0 | A0A2K1R5L6_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7FEG2 | 0.0 | A0A3N7FEG2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s12770.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17040 | 7 | 8 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 8e-99 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G069900.1 |
Entrez Gene | 18094488 |
Publications ? help Back to Top | |||
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