PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G066200.1 | ||||||||
Common Name | POPTR_0001s13110g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 793aa MW: 88937.5 Da PI: 6.9789 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g++W++++i+r++++r++l++GW+ Fv+a++L +gD ++F Potri.001G066200.1 140 FCKMLTASDTSTHGGFSVLRRHADEClppldmSLQPPA-QELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSLFVSAKKLVAGDAFIFL-- 227 89*****************************9666665.59************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+v+v+r+ Potri.001G066200.1 228 RGETEELRVGVRRA 241 3489999****985 PP | |||||||
2 | Auxin_resp | 118 | 8e-39 | 266 | 348 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 ++ha+st+s+F+v+Y+Pr+s++eF+++++k+++++k+++++GmRfkm+fe e+++e+r+sGtv+gv+++dp +Wp+SkWr+Lk Potri.001G066200.1 266 VWHAVSTGSMFTVYYKPRTSPAEFIIPIDKYRESVKINYAIGMRFKMKFEAEEAPEQRFSGTVIGVEEADPKKWPRSKWRCLK 348 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-38 | 134 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.41E-39 | 134 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.13E-20 | 138 | 240 | No hit | No description |
PROSITE profile | PS50863 | 11.617 | 140 | 242 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-21 | 140 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-21 | 140 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.6E-35 | 267 | 348 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.99E-12 | 665 | 745 | No hit | No description |
PROSITE profile | PS51745 | 25.128 | 668 | 750 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.7E-7 | 713 | 759 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MINGSYSVDN KRNGIARGSS SFPVAGEGSE DALYKELWHA CAGPLVTVPR QGELVYYFPQ 60 GHIEQVEAST NQVADDQQMP AYNLPPKILC RVVNVQLKAE LDTDEVFAQV ILLPVAEQDV 120 DLVEKEDLPP PPARPRVHSF CKMLTASDTS THGGFSVLRR HADECLPPLD MSLQPPAQEL 180 VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSAKKLVA GDAFIFLRGE TEELRVGVRR 240 ALSQPSNVPS SVMSSHSMHI GILATVWHAV STGSMFTVYY KPRTSPAEFI IPIDKYRESV 300 KINYAIGMRF KMKFEAEEAP EQRFSGTVIG VEEADPKKWP RSKWRCLKVR WDETSPVHRP 360 DRVSPWKIER ALAPSLDPVP GCQSKRHRSN MATSSADSSA PTKKDNEPSR HLQHKEILTL 420 RNTHAGKNYS DSKHNPAQAL FQGKDQTAFD NRKLGPDDKI PQVMHGAKLM NLTTGPGTLH 480 ESYESTHPFF ELNSDDVDRP SKLNETGMFN CHSAPLMYLG HPFNMMASRM EVHVAKDKDI 540 QQQRGSWFSP LPYADNSSHP SGSKPQHLPF QQRNKETSKD GNCKLFGFSL FGNPMAAEPA 600 IIHRHSTEKQ QQQINVASDH LKLLGSEGFL EQAKHSKHVR PEEQGNIFQA SALHSKDVQG 660 MPEGDSTRRC VKVYKQGTAV GRSLDLAKFN GYNELTAELD QIFEFHGELV APNKDWLIVF 720 TDDEGDMMLV GDDPWQEFCS MVRRIFVFTR EEINRMEPRS LNLEAEGNSQ SADQMVDLMG 780 DGTSKHLPAV SP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-165 | 31 | 369 | 17 | 353 | Auxin response factor 1 |
4ldw_A | 1e-165 | 31 | 369 | 17 | 353 | Auxin response factor 1 |
4ldw_B | 1e-165 | 31 | 369 | 17 | 353 | Auxin response factor 1 |
4ldx_A | 1e-165 | 31 | 369 | 17 | 353 | Auxin response factor 1 |
4ldx_B | 1e-165 | 31 | 369 | 17 | 353 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11733 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G066200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208482 | 1e-176 | AC208482.1 Populus trichocarpa clone JGIACSB13-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299344.2 | 0.0 | auxin response factor 2B isoform X1 | ||||
Refseq | XP_024445165.1 | 0.0 | auxin response factor 2B isoform X1 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | B9GMS5 | 0.0 | B9GMS5_POPTR; Auxin response factor | ||||
STRING | POPTR_0001s13110.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.4 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G066200.1 |
Entrez Gene | 7491424 |