PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G061800.2
Common NamePOPTR_0001s13310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 445aa    MW: 49207.9 Da    PI: 6.0999
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G061800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41e-061251437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                          C+ ++e+ + l+C+ ++  lC  C ++ H+       H
  Potri.001G061800.2 12 VPCDFCSEQTAVLYCRADSAKLCLFCDQHVHSAnllsrkH 51
                        57***************************99555665556 PP
2zf-B_box23.89.4e-085498341
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         ++C++++ +++++ C +++  lC++C    H +      H++++
  Potri.001G061800.2 54 SQICDNCSTEPVSFRCSTDNLVLCQECDWDAHGScsvsasHDRTT 98
                        689*************************99994477788887665 PP
3CCT63.94.7e-22396439144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a++RYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk +
  Potri.001G061800.2 396 RGDAMQRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKTT 439
                         6789*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.954956IPR000315B-box-type zinc finger
SMARTSM003368.8E-13956IPR000315B-box-type zinc finger
CDDcd000214.55E-71244No hitNo description
PROSITE profilePS501199.6845299IPR000315B-box-type zinc finger
PfamPF006431.1E-55496IPR000315B-box-type zinc finger
CDDcd000211.73E-55685No hitNo description
SMARTSM003361.85799IPR000315B-box-type zinc finger
PROSITE profilePS5101714.912396438IPR010402CCT domain
PfamPF062031.2E-16396438IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MVTHKSKTKE TVPCDFCSEQ TAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
STEPVSFRCS TDNLVLCQEC DWDAHGSCSV SASHDRTTIE GFSGCPSALD LASIWGFDLE  120
EKKPEPLIEN WSNNSCGVIH DLVNEPWVYD KSSGNLTFQD LMVPNENNNN GNRNIDNSPS  180
CGKYKHVICK QLFELFKRDL IGGGVEGEGC GFGDGEGCGF GGGDGGGETL VTQSRSGWRS  240
GVKGVQFGNG NDGERISCVF NNDSGLLLLQ VWDFHLGQLR NHDESGQLEI EYVANDAGFV  300
IKDFGELMKE TSSTSPKMLG DMYQMNCSTA HDDMTQGPAT SESNNLPIVR SGFSKPRCSS  360
SSNDVQFMEQ SILIRGEGLK MEAATKVDME LLARNRGDAM QRYKEKKKNR RYDKHIRYES  420
RKARADTRKR VKGRFVKTTE APDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G061800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2977050.0KC297705.1 Populus tomentosa COL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036146.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like isoform X1
TrEMBLU3Q0450.0U3Q045_POPTO; COL
STRINGPOPTR_0001s13310.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-115B-box type zinc finger protein with CCT domain