PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G061800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 515aa MW: 56453.8 Da PI: 6.0679 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.2 | 1.2e-06 | 12 | 51 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ + l+C+ ++ lC C ++ H+ H Potri.001G061800.1 12 VPCDFCSEQTAVLYCRADSAKLCLFCDQHVHSAnllsrkH 51 57***************************99555555556 PP | |||||||
2 | zf-B_box | 23.5 | 1.1e-07 | 54 | 98 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++ +++++ C +++ lC++C H + H++++ Potri.001G061800.1 54 SQICDNCSTEPVSFRCSTDNLVLCQECDWDAHGScsvsasHDRTT 98 689*************************99994477778887665 PP | |||||||
3 | CCT | 63.7 | 5.7e-22 | 466 | 509 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk + Potri.001G061800.1 466 RGDAMQRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKTT 509 6789*************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.954 | 9 | 56 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.8E-13 | 9 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.94E-7 | 12 | 44 | No hit | No description |
PROSITE profile | PS50119 | 9.684 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-5 | 54 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.66E-6 | 56 | 85 | No hit | No description |
SMART | SM00336 | 1.8 | 57 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.912 | 466 | 508 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.5E-16 | 466 | 508 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 515 aa Download sequence Send to blast |
MVTHKSKTKE TVPCDFCSEQ TAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC 60 STEPVSFRCS TDNLVLCQEC DWDAHGSCSV SASHDRTTIE GFSGCPSALD LASIWGFDLE 120 EKKPEPLIEN WSNNSCGVIH DLVNEPWVYD KSSGNLTFQD LMVPNENNNN GNRNIDNVMI 180 FGNVTKSPSC GKYKHVICKQ LFELFKRDLI GGGVEGEGCG FGDGEGCGFG GGDGGGETLV 240 TQSRSGWRSG VKGVQFGNGN DGGFGDDNVV VCGGNGSGGN VRGEQLLQEQ RPFTSLLMLP 300 TEVDVKSNGR VVGGDITWDS NAKAHGTQVW DFHLGQLRNH DESGQLEIEY VANDAGFVIK 360 DFGELMKETS STSPKMLGDM YQMNCSTAHD DMTSFNNNLN NPTSSQGPAT SESNNLPIVR 420 SGFSKPRCSS SSNDVQFMEQ SILIRGEGLK MEAATKVDME LLARNRGDAM QRYKEKKKNR 480 RYDKHIRYES RKARADTRKR VKGRFVKTTE APDS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G061800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC297705 | 0.0 | KC297705.1 Populus tomentosa COL gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459446.1 | 0.0 | zinc finger protein CONSTANS-LIKE 15 isoform X1 | ||||
TrEMBL | A0A2K2BT82 | 0.0 | A0A2K2BT82_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s13310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4737 | 28 | 43 | Representative plant | OGRP5453 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28050.1 | 8e-66 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G061800.1 |