PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G060000.2 | ||||||||
Common Name | POPTR_0001s13500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 262aa MW: 28183.6 Da PI: 10.5287 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.3 | 3.8e-36 | 58 | 143 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG ++d++ti+WLlqqa+p+i+++tgt++ +as+ a++s+s+++ns Potri.001G060000.2 58 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGNKSDGETIQWLLQQAEPSIIAATGTGTFPASALaVAGASVSEQGNSV 143 789*************************************************************9999977764444444444332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-30 | 63 | 156 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.351 | 64 | 118 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEPKGPNHHQ LQVPSFLNPP QKASMPENNI NNHNKQPAEI KDLQIMIENR DHNKKQLAPK 60 RSSNKDRHKK VDGRGRRIRM PALCAARIFQ LTRELGNKSD GETIQWLLQQ AEPSIIAATG 120 TGTFPASALA VAGASVSEQG NSVSTGLHTK MEGLGPAVVG SRDRTNWTMM NTNLGRSNVA 180 SGVWPSVGGI GSGFVPNSGQ STSNFGNENS TTLPKIGAWT FTGWAWWDVQ SSSFESLLPA 240 DGAGPWCLKF VESRTAARAT S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.14496 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00641 | PBM | Transfer from Manes.12G007700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G060000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452361.1 | 1e-158 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 1e-53 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2K2BT32 | 1e-156 | A0A2K2BT32_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s13500.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-55 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G060000.2 |
Entrez Gene | 7482799 |