PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G060000.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 303aa MW: 32844.7 Da PI: 9.5734

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G060000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.9	5.3e-36	58	143	2	86
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG ++d++ti+WLlqqa+p+i+++tgt++ +as+ a++s+s+++ns Potri.001G060000.1 58 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGNKSDGETIQWLLQQAEPSIIAATGTGTFPASALaVAGASVSEQGNSV 143 789*************************************************************9999977764444444444332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-30	63	160	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.351	64	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEPKGPNHHQ LQVPSFLNPP QKASMPENNI NNHNKQPAEI KDLQIMIENR DHNKKQLAPK 60 RSSNKDRHKK VDGRGRRIRM PALCAARIFQ LTRELGNKSD GETIQWLLQQ AEPSIIAATG 120 TGTFPASALA VAGASVSEQG NSVSTGLHTK MEGLGPAVVG SRDRTNWTMM NTNLGRSNVA 180 SGVWPSVGGI GSGFVPNSGQ STSNFGNENS TTLPKYGFHG VEFPNINMGL MSFYSMFSGT 240 NQQFPGLELG LSQDGHGGMF NPQALNPFCQ QMVQGRGVLN SLNQEQQQEQ PHDKDDSQGS 300 RQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.14496	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00641	PBM	Transfer from Manes.12G007700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G060000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452361.1	0.0	transcription factor TCP20
Swissprot	Q9LSD5	8e-69	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2K2BT32	0.0	A0A2K2BT32_POPTR; Uncharacterized protein
STRING	POPTR_0003s16630.1	1e-170	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-69	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.001G060000.1

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]