PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G058600.1
Common NamePOPTR_0001s13630g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 377aa    MW: 41280.9 Da    PI: 9.5155
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G058600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.8e-4187163278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls++++yhrrhkvCe+hsk+++v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  Potri.001G058600.1  87 CLVDGCTSDLSKCRDYHRRHKVCEFHSKSSQVFIKGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 163
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-3383148IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.90684161IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3885166IPR004333Transcription factor, SBP-box
PfamPF031105.2E-3087160IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGYNFKTPWE LAESEKQSSP YFTQITVSSS LRVPQATGYC SVDLKLGNSG NFKDKYKDPG  60
GSLMESSSSG SSKRARTPNN ATLVPSCLVD GCTSDLSKCR DYHRRHKVCE FHSKSSQVFI  120
KGQEQRFCQQ CSRFHSLGEF DEGKRSCRKR LDGHNRRRRK PQPDSLSVNS ARIFSNQGTR  180
YLQFGSSQIF STSAMSSAWT GAAKAERDPM LYTSQSSMNF DGRKNLFPGS LSPNYKGGKQ  240
FPFLQGTSST LPGDSIRLNA NSTLGNIGNS QKMFSDGLNR VIDSNRALSL LSSPPSETRD  300
IGLSHVVQPD LNPPAQSLIP SLNYNNALGM ESEPVGPVLA SDGSSNSNPH GQHMFQIGPD  360
WLSANGSHQT LSFSWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30871601184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143160KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G058600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299319.20.0squamosa promoter-binding-like protein 16
RefseqXP_024454730.10.0squamosa promoter-binding-like protein 16
RefseqXP_024454737.10.0squamosa promoter-binding-like protein 16
TrEMBLA0A385JHL30.0A0A385JHL3_POPTO; Squamosa promoter-binding protein-like
TrEMBLB9GMM70.0B9GMM7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s13630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-48SBP family protein