PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G058200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21179.4 Da PI: 9.922 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienks rqvtfskRrng++KKA+ELSvLCd++va++ fs+ gklye+ss Potri.001G058200.1 9 KRIENKSSRQVTFSKRRNGLIKKAHELSVLCDVQVALLTFSNGGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 57.7 | 5.2e-20 | 83 | 171 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++e + ++a+Lk+ e Lq qR+l G + ++ +l e q +qL+ +l+ +R++K++l+l++++ lq kek+l+een+ L+k++ Potri.001G058200.1 83 GANDSEVYFGKYANLKSAAEILQIPQRKLEGTCPGEQTLSEFVQQATQLDAALTYVRARKMQLMLDSVKSLQDKEKMLKEENQLLQKQV 171 455667778899**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.174 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-31 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.73E-39 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 6.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-15 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.514 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MGRKKVELKR IENKSSRQVT FSKRRNGLIK KAHELSVLCD VQVALLTFSN GGKLYEFSSV 60 GSIAKILERY KSHSEVMATS SKGANDSEVY FGKYANLKSA AEILQIPQRK LEGTCPGEQT 120 LSEFVQQATQ LDAALTYVRA RKMQLMLDSV KSLQDKEKML KEENQLLQKQ VVYNPETHSC 180 IQVAYFH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-20 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 9e-20 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 9e-20 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 9e-20 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_A | 9e-20 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_B | 9e-20 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_C | 9e-20 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_D | 9e-20 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.1006 | 0.0 | bud| catkin |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G058200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463173.1 | 1e-121 | MADS-box protein EJ2 isoform X1 | ||||
TrEMBL | A0A3N7E7L5 | 1e-120 | A0A3N7E7L5_POPTR; Uncharacterized protein | ||||
STRING | EOX99786 | 5e-52 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14472 | 4 | 12 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03710.3 | 5e-50 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G058200.1 |